RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 GFPT2O94808 682 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 CCDC130P13994 396 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 FKBP3Q00688 224 aaKnown RBP6.64□□□□□ -1.35
CLK3-212ENST00000563418 RNF43Q68DV7 783 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 AKAP14Q86UN6 197 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 DNAJC7Q99615 494 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 SPATA16Q9BXB7 569 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 UBXN6Q9BZV1 441 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 DCTN4Q9UJW0 460 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 LAMC3Q9Y6N6 1575 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 PABPN1LA6NDY0 278 aaKnown RBP6.64□□□□□ -1.35
CLK3-212ENST00000563418 IDH3BO43837 385 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 KLHL41O60662 606 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 TRIM49P0CI25 452 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 TRIM49CP0CI26 452 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 SCNN1BP51168 640 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 MTF1Q14872 753 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 LIN52Q52LA3 116 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 LUZP2Q86TE4 346 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 PDIK1LQ8N165 341 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 NAT14Q8WUY8 206 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 MTA3Q9BTC8 594 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 BRIP1Q9BX63 1249 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 COMMD10Q9Y6G5 202 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 MTRF1O75570 445 aaKnown RBP6.64□□□□□ -1.35
CLK3-212ENST00000563418 TTLL1O95922 423 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 IL12RB1P42701 662 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 DNAJC3Q13217 504 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 EXOC3L4Q17RC7 722 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 NET1Q7Z628 596 aaPredicted RBP6.64□□□□□ -1.35
CLK3-212ENST00000563418 ERICH1Q86X53 443 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 ANKRD13CQ8N6S4 541 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 ATL2Q8NHH9 583 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 ZNF398Q8TD17 642 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 GIPC3Q8TF64 312 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 GIPC2Q8TF65 315 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 LRMDAQ9H2I8 198 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 DDX25Q9UHL0 483 aaKnown RBP6.64□□□□□ -1.35
CLK3-212ENST00000563418 MAP3K19Q56UN5 1328 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 A0A087WXM4 84 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 AP3B1O00203 1094 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 TJP3O95049 919 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 FLT3P36888 993 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 CMPK2Q5EBM0 449 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 ELMSAN1Q6PJG2 1045 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 SYN2Q92777 582 aaPredicted RBP6.64□□□□□ -1.35
CLK3-212ENST00000563418 PAGE5Q96GU1 130 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 CNPY3Q9BT09 278 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 GPATCH8Q9UKJ3 1502 aaKnown RBP6.64□□□□□ -1.35
CLK3-212ENST00000563418 NCF2P19878 526 aaPredicted RBP6.64□□□□□ -1.35
CLK3-212ENST00000563418 TCHHL1Q5QJ38 904 aaPredicted RBP6.64□□□□□ -1.35
CLK3-212ENST00000563418 TOR1AIP2Q8NFQ8 470 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 RIN3Q8TB24 985 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 SLC10A4Q96EP9 437 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 SCAF8Q9UPN6 1271 aaKnown RBP6.64□□□□□ -1.35
CLK3-212ENST00000563418 COL4A3BPQ9Y5P4 624 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 PTPRTO14522 1441 aa6.64□□□□□ -1.35
CLK3-212ENST00000563418 PGM3O95394 542 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 ASMTLO95671 621 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 ZNF18P17022 549 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 OASLQ15646 514 aaKnown RBP6.63□□□□□ -1.35
CLK3-212ENST00000563418 WDR44Q5JSH3 913 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 RSBN1Q5VWQ0 802 aaPredicted RBP6.63□□□□□ -1.35
CLK3-212ENST00000563418 RAD9BQ6WBX8 426 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 CHST3Q7LGC8 479 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 LRRC49Q8IUZ0 686 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 TRABDQ9H4I3 376 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 DSEQ9UL01 958 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 MYRFQ9Y2G1 1151 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 MROH7Q68CQ1 1323 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 TTC26A0AVF1 554 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 EPHB1P54762 984 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 RPL26P61254 145 aaKnown RBP6.63□□□□□ -1.35
CLK3-212ENST00000563418 ZNF268Q14587 947 aaPredicted RBP6.63□□□□□ -1.35
CLK3-212ENST00000563418 ERMARDQ5T6L9 678 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 PDPRQ8NCN5 879 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 APPBP2Q92624 585 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 B3GALT6Q96L58 329 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 IRX2Q9BZI1 471 aaPredicted RBP6.63□□□□□ -1.35
CLK3-212ENST00000563418 KDM6AO15550 1401 aaPredicted RBP6.63□□□□□ -1.35
CLK3-212ENST00000563418 ABCB4P21439 1286 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 COPAP53621 1224 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 ARL4CP56559 192 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 CYP4F22Q6NT55 531 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 LRRC6Q86X45 466 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.63□□□□□ -1.35
CLK3-212ENST00000563418 TRIM17Q9Y577 477 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 UMODL1Q5DID0 1318 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 PNMA6EA0A0J9YXQ4 647 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 CHL1O00533 1208 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 DTNBO60941 627 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 RFX1P22670 979 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 USP46P62068 366 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 ACCSLQ4AC99 568 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 ZNF662Q6ZS27 426 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 PIK3AP1Q6ZUJ8 805 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 TCAIMQ8N3R3 496 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 HDAC7Q8WUI4 952 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 CCDC127Q96BQ5 260 aa6.63□□□□□ -1.35
CLK3-212ENST00000563418 LPXNO60711 386 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms