RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 RNF139Q8WU17 664 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 SPTLC3Q9NUV7 552 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 COL20A1Q9P218 1284 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 CACNA1FO60840 1977 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 ACTN1P12814 892 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 AKAP5P24588 427 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 PPP1R7Q15435 360 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 SEL1L2Q5TEA6 688 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 NAA35Q5VZE5 725 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 KRT39Q6A163 491 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 PPP4R3CPQ6ZMV5 832 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 KIAA1524Q8TCG1 905 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 SECISBP2LQ93073 1101 aaKnown RBP9.96□□□□□ -0.81
VPS39-205ENST00000562258 NUCKS1Q9H1E3 243 aaKnown RBP9.96□□□□□ -0.81
VPS39-205ENST00000562258 HDAC6Q9UBN7 1215 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 NR2E3Q9Y5X4 410 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 CNTNAP1P78357 1384 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 ARHGAP6O43182 974 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 TEX33O43247 280 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 HMGCRP04035 888 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 INHAP05111 366 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 FGRP09769 529 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 KCNK18Q7Z418 384 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 IFT81Q8WYA0 676 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 PGBD4Q96DM1 585 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 EPN1Q9Y6I3 576 aaPredicted RBP9.96□□□□□ -0.82
VPS39-205ENST00000562258 LRRC37A3O60309 1634 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 ARHGEF37A1IGU5 675 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 PHF20L1A8MW92 1017 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 ACTN4O43707 911 aaKnown RBP9.96□□□□□ -0.82
VPS39-205ENST00000562258 WEE2P0C1S8 567 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 IRX5P78411 483 aaPredicted RBP9.96□□□□□ -0.82
VPS39-205ENST00000562258 CELF3Q5SZQ8 465 aaKnown RBP9.96□□□□□ -0.82
VPS39-205ENST00000562258 NME8Q8N427 588 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 RDM1Q8NG50 284 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 ELMO3Q96BJ8 720 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 L3MBTL3Q96JM7 780 aaPredicted RBP9.96□□□□□ -0.82
VPS39-205ENST00000562258 CBWD1Q9BRT8 395 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 RNPEPQ9H4A4 650 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 ZKSCAN5Q9Y2L8 839 aa9.96□□□□□ -0.82
VPS39-205ENST00000562258 IGSF9BQ9UPX0 1349 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 BTAF1O14981 1849 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 CTAGE15A4D2H0 777 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 IGF2BP3O00425 579 aaKnown RBP eCLIP9.95□□□□□ -0.82
VPS39-205ENST00000562258 IKBKBO14920 756 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 NKRFO15226 690 aaKnown RBP eCLIP9.95□□□□□ -0.82
VPS39-205ENST00000562258 RHOXF2BP0C7M4 288 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 CTAGE8P0CG41 777 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 CDC42EP1Q00587 391 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 LAMTOR4Q0VGL1 99 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 TMEM132DQ14C87 1099 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 CTAGE6Q86UF2 777 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 CTAGE4Q8IX94 777 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 MRRFQ96E11 262 aaKnown RBP9.95□□□□□ -0.82
VPS39-205ENST00000562258 RHOXF2Q9BQY4 288 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 CREBZFQ9NS37 354 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 PAXBP1Q9Y5B6 917 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 E7EVH7 732 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 WNT7AO00755 349 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 LBX1P52954 281 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 KRT81Q14533 505 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 MOXD1Q6UVY6 613 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 CBWD2Q8IUF1 395 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 C4orf19Q8IY42 314 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 FBXL13Q8NEE6 735 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 SEPT8Q92599 483 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 MAML3Q96JK9 1138 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 FAM49BQ9NUQ9 324 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 HES2Q9Y543 173 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 UQCRHLA0A096LP55 91 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 GPR182O15218 404 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 ZBTB24O43167 697 aaPredicted RBP9.95□□□□□ -0.82
VPS39-205ENST00000562258 MSCO60682 206 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 UQCRHP07919 91 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 ITKQ08881 620 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 NBPF20Q3BBV1 942 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 Q4G0T1 1027 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 THAP9Q9H5L6 903 aa9.95□□□□□ -0.82
VPS39-205ENST00000562258 ASGR1P07306 291 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 SLC26A2P50443 739 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 SND1Q7KZF4 910 aaKnown RBP eCLIP9.94□□□□□ -0.82
VPS39-205ENST00000562258 TMC7Q7Z402 723 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 SIAH1Q8IUQ4 282 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 KLHL7Q8IXQ5 586 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 POP1Q99575 1024 aaKnown RBP9.94□□□□□ -0.82
VPS39-205ENST00000562258 C7orf25Q9BPX7 421 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 TBX20Q9UMR3 447 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 SYNPO2Q9UMS6 1093 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 CRYBG1Q9Y4K1 1723 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 SOWAHBA6NEL2 793 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 CASTOR2A6NHX0 329 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 PDXKO00764 312 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 TRAPPC3O43617 180 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 FERP16591 822 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 HOXA7P31268 230 aaPredicted RBP9.94□□□□□ -0.82
VPS39-205ENST00000562258 EIF4A3P38919 411 aaKnown RBP9.94□□□□□ -0.82
VPS39-205ENST00000562258 MRPS9P82933 396 aaKnown RBP9.94□□□□□ -0.82
VPS39-205ENST00000562258 NCOA4Q13772 614 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 ARID5BQ14865 1188 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 RPS6KA1Q15418 735 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms