RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 NPTXRO95502 500 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 NTRK1P04629 796 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 PYGMP11217 842 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 GNAT1P11488 350 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 SOX5P35711 763 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 IL15P40933 162 aaPredicted RBP7.29□□□□□ -1.24
LRRC28-220ENST00000561253 IARSP41252 1262 aaKnown RBP7.29□□□□□ -1.24
LRRC28-220ENST00000561253 DNM2P50570 870 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 IRX6P78412 446 aaPredicted RBP7.29□□□□□ -1.24
LRRC28-220ENST00000561253 SPIRE1Q08AE8 756 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 HDAC1Q13547 482 aaPredicted RBP7.29□□□□□ -1.24
LRRC28-220ENST00000561253 UBE4AQ14139 1066 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 PIK3R6Q5UE93 754 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 CDCA2Q69YH5 1023 aaPredicted RBP7.29□□□□□ -1.24
LRRC28-220ENST00000561253 CBLL1Q75N03 491 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 KRT26Q7Z3Y9 468 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 RIOX2Q8IUF8 465 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 IGSF22Q8N9C0 903 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 WNK4Q96J92 1243 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 MPHOSPH8Q99549 860 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 ANKRD2Q9GZV1 360 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 SIL1Q9H173 461 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 CHMP4BQ9H444 224 aaKnown RBP7.29□□□□□ -1.24
LRRC28-220ENST00000561253 DCTPP1Q9H773 170 aa7.29□□□□□ -1.24
LRRC28-220ENST00000561253 CEP350Q5VT06 3117 aa7.28□□□□□ -1.24
LRRC28-220ENST00000561253 SCN9AQ15858 1988 aa7.28□□□□□ -1.24
LRRC28-220ENST00000561253 UFL1O94874 794 aa7.28□□□□□ -1.24
LRRC28-220ENST00000561253 VIL1P09327 827 aaKnown RBP7.28□□□□□ -1.24
LRRC28-220ENST00000561253 POU3F2P20265 443 aaPredicted RBP7.28□□□□□ -1.24
LRRC28-220ENST00000561253 IBSPP21815 317 aaPredicted RBP7.28□□□□□ -1.24
LRRC28-220ENST00000561253 STAT3P40763 770 aa7.28□□□□□ -1.24
LRRC28-220ENST00000561253 TFCP2Q12800 502 aa7.28□□□□□ -1.24
LRRC28-220ENST00000561253 CRY1Q16526 586 aa7.28□□□□□ -1.24
LRRC28-220ENST00000561253 PTPROQ16827 1216 aa7.28□□□□□ -1.24
LRRC28-220ENST00000561253 FYB2Q5VWT5 728 aa7.28□□□□□ -1.24
LRRC28-220ENST00000561253 WWC2Q6AWC2 1192 aa7.28□□□□□ -1.24
LRRC28-220ENST00000561253 ABHD17CQ6PCB6 329 aa7.28□□□□□ -1.24
LRRC28-220ENST00000561253 C16orf59Q7L2K0 433 aa7.28□□□□□ -1.24
LRRC28-220ENST00000561253 FAM84BQ96KN1 310 aaPredicted RBP7.28□□□□□ -1.24
LRRC28-220ENST00000561253 CELF4Q9BZC1 486 aaKnown RBP7.28□□□□□ -1.24
LRRC28-220ENST00000561253 CNNM1Q9NRU3 951 aa7.28□□□□□ -1.24
LRRC28-220ENST00000561253 EXOC6BQ9Y2D4 811 aa7.28□□□□□ -1.24
LRRC28-220ENST00000561253 YBX2Q9Y2T7 364 aaKnown RBP7.28□□□□□ -1.24
LRRC28-220ENST00000561253 SPEF2Q9C093 1822 aa7.28□□□□□ -1.24
LRRC28-220ENST00000561253 ZNF609O15014 1411 aa7.27□□□□□ -1.24
LRRC28-220ENST00000561253 KRIT1O00522 736 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 PPIP5K2O43314 1243 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 SURF6O75683 361 aaKnown RBP7.27□□□□□ -1.25
LRRC28-220ENST00000561253 IGHDP01880 384 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 CKMP06732 381 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 GLI4P10075 376 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 PUM3Q15397 648 aaKnown RBP7.27□□□□□ -1.25
LRRC28-220ENST00000561253 KCNMB1Q16558 191 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 METTL24Q5JXM2 366 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 ADGRF1Q5T601 910 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 SMC5Q8IY18 1101 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 CISD2Q8N5K1 135 aaKnown RBP7.27□□□□□ -1.25
LRRC28-220ENST00000561253 NETO2Q8NC67 525 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 SUPT20HQ8NEM7 779 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 LEO1Q8WVC0 666 aaPredicted RBP7.27□□□□□ -1.25
LRRC28-220ENST00000561253 INTS4Q96HW7 963 aaKnown RBP7.27□□□□□ -1.25
LRRC28-220ENST00000561253 SLC6A17Q9H1V8 727 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 TNFRSF12AQ9NP84 129 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 GPR108Q9NPR9 543 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 RNF181Q9P0P0 153 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 NUDT5Q9UKK9 219 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 COL1A1P02452 1464 aaPredicted RBP7.27□□□□□ -1.25
LRRC28-220ENST00000561253 CHD4Q14839 1912 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 DICER1Q9UPY3 1922 aaKnown RBP7.27□□□□□ -1.25
LRRC28-220ENST00000561253 ZNF646O15015 1829 aaPredicted RBP7.27□□□□□ -1.25
LRRC28-220ENST00000561253 ZNF541Q9H0D2 1346 aa7.27□□□□□ -1.25
LRRC28-220ENST00000561253 HMMRO75330 724 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 GLRX3O76003 335 aaKnown RBP7.26□□□□□ -1.25
LRRC28-220ENST00000561253 MPOP05164 745 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 CENPBP07199 599 aaPredicted RBP7.26□□□□□ -1.25
LRRC28-220ENST00000561253 COL6A2P12110 1019 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 IL1R1P14778 569 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 ADORA1P30542 326 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 TIMM10P62072 90 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 CXCL9Q07325 125 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 PCBP1Q15365 356 aaKnown RBP eCLIP7.26□□□□□ -1.25
LRRC28-220ENST00000561253 ATP2B3Q16720 1220 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 TMEM177Q53S58 311 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 OTOP3Q7RTS5 596 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 RNF180Q86T96 592 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 ZSWIM9Q86XI8 627 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 DCP2Q8IU60 420 aaKnown RBP7.26□□□□□ -1.25
LRRC28-220ENST00000561253 UBR7Q8N806 425 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 TDRD7Q8NHU6 1098 aaKnown RBP7.26□□□□□ -1.25
LRRC28-220ENST00000561253 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.26□□□□□ -1.25
LRRC28-220ENST00000561253 LPIN2Q92539 896 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 EAF2Q96CJ1 260 aaPredicted RBP7.26□□□□□ -1.25
LRRC28-220ENST00000561253 AP5M1Q9H0R1 490 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 CD209Q9NNX6 404 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 CABP5Q9NP86 173 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 DBR1Q9UK59 544 aaKnown RBP7.26□□□□□ -1.25
LRRC28-220ENST00000561253 CBLCQ9ULV8 474 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 COL4A3BPQ9Y5P4 624 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 FPGT-TNNI3KV9GXZ4 949 aa7.26□□□□□ -1.25
LRRC28-220ENST00000561253 SALL3Q9BXA9 1300 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms