RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 CPB2Q96IY4 423 aa17.75■□□□□ 0.43
LMX1B-204ENST00000561065 EIF2AQ9BY44 585 aaKnown RBP17.75■□□□□ 0.43
LMX1B-204ENST00000561065 BACH2Q9BYV9 841 aa17.75■□□□□ 0.43
LMX1B-204ENST00000561065 POLR3FQ9H1D9 316 aaPredicted RBP17.75■□□□□ 0.43
LMX1B-204ENST00000561065 NRDE2Q9H7Z3 1164 aa17.75■□□□□ 0.43
LMX1B-204ENST00000561065 TUFT1Q9NNX1 390 aa17.75■□□□□ 0.43
LMX1B-204ENST00000561065 ENTPD7Q9NQZ7 604 aa17.75■□□□□ 0.43
LMX1B-204ENST00000561065 DNAJB4Q9UDY4 337 aa17.75■□□□□ 0.43
LMX1B-204ENST00000561065 FAM86C2PA6NEL3 165 aa17.74■□□□□ 0.43
LMX1B-204ENST00000561065 ASAP2O43150 1006 aa17.74■□□□□ 0.43
LMX1B-204ENST00000561065 SKIP12755 728 aa17.74■□□□□ 0.43
LMX1B-204ENST00000561065 COL9A1P20849 921 aa17.74■□□□□ 0.43
LMX1B-204ENST00000561065 TOB1P50616 345 aaPredicted RBP17.74■□□□□ 0.43
LMX1B-204ENST00000561065 COASYQ13057 564 aa17.74■□□□□ 0.43
LMX1B-204ENST00000561065 MXD4Q14582 209 aaPredicted RBP17.74■□□□□ 0.43
LMX1B-204ENST00000561065 GLB1LQ6UWU2 654 aa17.74■□□□□ 0.43
LMX1B-204ENST00000561065 ZNF280BQ86YH2 543 aa17.74■□□□□ 0.43
LMX1B-204ENST00000561065 TMX3Q96JJ7 454 aa17.74■□□□□ 0.43
LMX1B-204ENST00000561065 VN1R3Q9BXE9 311 aa17.74■□□□□ 0.43
LMX1B-204ENST00000561065 PRKAG3Q9UGI9 489 aa17.74■□□□□ 0.43
LMX1B-204ENST00000561065 FAM50BQ9Y247 325 aa17.74■□□□□ 0.43
LMX1B-204ENST00000561065 PI4K2BG5E9Z4 385 aa17.73■□□□□ 0.43
LMX1B-204ENST00000561065 H3BQV1 296 aa17.73■□□□□ 0.43
LMX1B-204ENST00000561065 B4GALT5O43286 388 aa17.73■□□□□ 0.43
LMX1B-204ENST00000561065 U2AF2P26368 475 aaKnown RBP eCLIP17.73■□□□□ 0.43
LMX1B-204ENST00000561065 SLC11A1P49279 550 aa17.73■□□□□ 0.43
LMX1B-204ENST00000561065 ECM1Q16610 540 aa17.73■□□□□ 0.43
LMX1B-204ENST00000561065 PDE12Q6L8Q7 609 aaKnown RBP17.73■□□□□ 0.43
LMX1B-204ENST00000561065 CCDC43Q96MW1 224 aaKnown RBP17.73■□□□□ 0.43
LMX1B-204ENST00000561065 CDCA3Q99618 268 aaPredicted RBP17.73■□□□□ 0.43
LMX1B-204ENST00000561065 POLR3CQ9BUI4 534 aaPredicted RBP17.73■□□□□ 0.43
LMX1B-204ENST00000561065 C1QTNF1Q9BXJ1 281 aa17.73■□□□□ 0.43
LMX1B-204ENST00000561065 RSAD1Q9HA92 442 aa17.73■□□□□ 0.43
LMX1B-204ENST00000561065 SMC3Q9UQE7 1217 aa17.73■□□□□ 0.43
LMX1B-204ENST00000561065 USP15Q9Y4E8 981 aaPredicted RBP17.73■□□□□ 0.43
LMX1B-204ENST00000561065 INO80B-WBP1J3KQ70 363 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 DDHD2O94830 711 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 ERLIN2O94905 339 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 GALTP07902 379 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 ARF4P18085 180 aaPredicted RBP17.72■□□□□ 0.43
LMX1B-204ENST00000561065 NCLP19338 710 aaKnown RBP17.72■□□□□ 0.43
LMX1B-204ENST00000561065 POU5F1BQ06416 359 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 MAEAQ7L5Y9 396 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 RSPH1Q8WYR4 309 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 BSNDQ8WZ55 320 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 NFKBIZQ9BYH8 718 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 GBP3Q9H0R5 595 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 ZBP1Q9H171 429 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 RNF39Q9H2S5 420 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 NGRNQ9NPE2 291 aaKnown RBP17.72■□□□□ 0.43
LMX1B-204ENST00000561065 PUF60Q9UHX1 559 aaKnown RBP17.72■□□□□ 0.43
LMX1B-204ENST00000561065 DBR1Q9UK59 544 aaKnown RBP17.72■□□□□ 0.43
LMX1B-204ENST00000561065 HES2Q9Y543 173 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 IPPQ9Y573 584 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 PCDHB6Q9Y5E3 794 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 STK24Q9Y6E0 443 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 C2orf71A6NGG8 1288 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 XRCC6P12956 609 aaKnown RBP eCLIP17.72■□□□□ 0.43
LMX1B-204ENST00000561065 RPA1P27694 616 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 ALDH7A1P49419 539 aaKnown RBP17.72■□□□□ 0.43
LMX1B-204ENST00000561065 FXR2P51116 673 aaKnown RBP eCLIP17.72■□□□□ 0.43
LMX1B-204ENST00000561065 KRT17Q04695 432 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 TFDP1Q14186 410 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 LLGL2Q6P1M3 1020 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 TMC7Q7Z402 723 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 CDR2LQ86X02 465 aaPredicted RBP17.72■□□□□ 0.43
LMX1B-204ENST00000561065 AUTS2Q8WXX7 1259 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 PGBD4Q96DM1 585 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 TMEM169Q96HH4 297 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 IGSF21Q96ID5 467 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 LRFN3Q9BTN0 628 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 CDH22Q9UJ99 828 aa17.72■□□□□ 0.43
LMX1B-204ENST00000561065 CNTNAP2Q9UHC6 1331 aa17.71■□□□□ 0.43
LMX1B-204ENST00000561065 PLXNA3P51805 1871 aa17.71■□□□□ 0.43
LMX1B-204ENST00000561065 DENND4AQ7Z401 1863 aa17.71■□□□□ 0.43
LMX1B-204ENST00000561065 TTLL13PA6NNM8 815 aa17.71■□□□□ 0.42
LMX1B-204ENST00000561065 EDN1P05305 212 aa17.71■□□□□ 0.42
LMX1B-204ENST00000561065 PDCP20941 246 aa17.71■□□□□ 0.42
LMX1B-204ENST00000561065 SMC1AQ14683 1233 aaKnown RBP17.71■□□□□ 0.42
LMX1B-204ENST00000561065 CDCA2Q69YH5 1023 aaPredicted RBP17.71■□□□□ 0.42
LMX1B-204ENST00000561065 NOTUMQ6P988 496 aa17.71■□□□□ 0.42
LMX1B-204ENST00000561065 SYCE2Q6PIF2 218 aa17.71■□□□□ 0.42
LMX1B-204ENST00000561065 TMEM184AQ6ZMB5 413 aa17.71■□□□□ 0.42
LMX1B-204ENST00000561065 MRPL43Q8N983 215 aaKnown RBP17.71■□□□□ 0.42
LMX1B-204ENST00000561065 SUSD6Q92537 303 aa17.71■□□□□ 0.42
LMX1B-204ENST00000561065 CCDC51Q96ER9 411 aa17.71■□□□□ 0.42
LMX1B-204ENST00000561065 RAB34Q9BZG1 259 aa17.71■□□□□ 0.42
LMX1B-204ENST00000561065 CSRNP2Q9H175 543 aa17.71■□□□□ 0.42
LMX1B-204ENST00000561065 NXF3Q9H4D5 531 aaKnown RBP17.71■□□□□ 0.42
LMX1B-204ENST00000561065 HCFC2Q9Y5Z7 792 aa17.71■□□□□ 0.42
LMX1B-204ENST00000561065 LRRIQ4A6NIV6 560 aa17.7■□□□□ 0.42
LMX1B-204ENST00000561065 INPPL1O15357 1258 aa17.7■□□□□ 0.42
LMX1B-204ENST00000561065 POMCP01189 267 aa17.7■□□□□ 0.42
LMX1B-204ENST00000561065 AXLP30530 894 aa17.7■□□□□ 0.42
LMX1B-204ENST00000561065 MLH1P40692 756 aa17.7■□□□□ 0.42
LMX1B-204ENST00000561065 RNASELQ05823 741 aaKnown RBP17.7■□□□□ 0.42
LMX1B-204ENST00000561065 PCBP1Q15365 356 aaKnown RBP eCLIP17.7■□□□□ 0.42
LMX1B-204ENST00000561065 IL17AQ16552 155 aa17.7■□□□□ 0.42
LMX1B-204ENST00000561065 MCTP1Q6DN14 999 aa17.7■□□□□ 0.42
LMX1B-204ENST00000561065 ANKRD54Q6NXT1 300 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms