RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 TNFAIP3P21580 790 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 INPP5BP32019 993 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 VAMP7P51809 220 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 HADHBP55084 474 aaKnown RBP7.87□□□□□ -1.15
VPS13C-206ENST00000558338 PSMC5P62195 406 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 SLC7A5Q01650 507 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 ENPEPQ07075 957 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 RASA3Q14644 834 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 COG2Q14746 738 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 DAAM2Q86T65 1068 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 DAW1Q8N136 415 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 XXYLT1Q8NBI6 393 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 SYTL5Q8TDW5 730 aaPredicted RBP7.87□□□□□ -1.15
VPS13C-206ENST00000558338 HDAC7Q8WUI4 952 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 JDP2Q8WYK2 163 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 AGBL1Q96MI9 1066 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 KRT12Q99456 494 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 AS3MTQ9HBK9 375 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 EPB41L5Q9HCM4 733 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 EHD2Q9NZN4 543 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 AJAP1Q9UKB5 411 aaPredicted RBP7.87□□□□□ -1.15
VPS13C-206ENST00000558338 PPP1R9AQ9ULJ8 1098 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 TTC7AQ9ULT0 858 aaPredicted RBP7.87□□□□□ -1.15
VPS13C-206ENST00000558338 USP20Q9Y2K6 914 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 STXBP5LQ9Y2K9 1186 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 NOC2LQ9Y3T9 749 aaKnown RBP7.87□□□□□ -1.15
VPS13C-206ENST00000558338 ZHX2Q9Y6X8 837 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 GOLGA6L10A0A0M3HER8 536 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 PHF20L1A8MW92 1017 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 NFIBO00712 420 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 MAFGO15525 162 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 DHX15O43143 795 aaKnown RBP7.87□□□□□ -1.15
VPS13C-206ENST00000558338 CEP104O60308 925 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 PHACTR2O75167 634 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 TRIM49P0CI25 452 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 TRIM49CP0CI26 452 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 DPEP1P16444 411 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 YWHABP31946 246 aaKnown RBP7.87□□□□□ -1.15
VPS13C-206ENST00000558338 DNA2P51530 1060 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 SMTNP53814 917 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 GALCP54803 685 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 GYS2P54840 703 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 NCKAP1LP55160 1127 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 HNRNPH2P55795 449 aaKnown RBP7.87□□□□□ -1.15
VPS13C-206ENST00000558338 ZNF280AP59817 542 aaPredicted RBP7.87□□□□□ -1.15
VPS13C-206ENST00000558338 GTF2BQ00403 316 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 GUCY2DQ02846 1103 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 TCEAL1Q15170 157 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 CBWD6Q4V339 395 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 CBWD3Q5JTY5 395 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 CBWD5Q5RIA9 395 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 CFAP58Q5T655 872 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 DCAF15Q66K64 600 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 MAATS1Q7Z4T9 603 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 NLRX1Q86UT6 975 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 CD302Q8IX05 232 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 EXOC8Q8IYI6 725 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 C1orf131Q8NDD1 294 aaKnown RBP7.87□□□□□ -1.15
VPS13C-206ENST00000558338 CCDC26Q8TAB7 109 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 LNX1Q8TBB1 728 aaPredicted RBP7.87□□□□□ -1.15
VPS13C-206ENST00000558338 MORC4Q8TE76 937 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 SCFD2Q8WU76 684 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 LRRC45Q96CN5 670 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 HES6Q96HZ4 224 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 SYT11Q9BT88 431 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 GLIS2Q9BZE0 524 aaPredicted RBP7.87□□□□□ -1.15
VPS13C-206ENST00000558338 TSPYL1Q9H0U9 437 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 ISCUQ9H1K1 167 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 TAF1DQ9H5J8 278 aaPredicted RBP7.87□□□□□ -1.15
VPS13C-206ENST00000558338 C17orf75Q9HAS0 396 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 SMARCAL1Q9NZC9 954 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 COL20A1Q9P218 1284 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 FER1L6Q2WGJ9 1857 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 PARP14Q460N5 1801 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 MIF4GDA9UHW6 222 aaKnown RBP7.86□□□□□ -1.15
VPS13C-206ENST00000558338 H0YCG3 227 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 AGPSO00116 658 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 ZBTB39O15060 712 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 RAD51CO43502 376 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 SHOX2O60902 331 aaPredicted RBP7.86□□□□□ -1.15
VPS13C-206ENST00000558338 HSPA6P17066 643 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 SCP2P22307 547 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 CCND2P30279 289 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 MXI1P50539 228 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 OAZ1P54368 228 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 MCCD1P59942 119 aaPredicted RBP7.86□□□□□ -1.15
VPS13C-206ENST00000558338 TGFB2P61812 414 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 EN1Q05925 392 aaPredicted RBP7.86□□□□□ -1.15
VPS13C-206ENST00000558338 CXCL9Q07325 125 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 ITGB3BPQ13352 177 aaPredicted RBP7.86□□□□□ -1.15
VPS13C-206ENST00000558338 MTMR3Q13615 1198 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 PGM5Q15124 567 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 EPC2Q52LR7 807 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 C11orf63Q6NUN7 778 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 ZNF746Q6NUN9 644 aaPredicted RBP7.86□□□□□ -1.15
VPS13C-206ENST00000558338 GJB7Q6PEY0 223 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 RNF207Q6ZRF8 634 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 OTUD6AQ7L8S5 288 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 NT5DC3Q86UY8 548 aa7.86□□□□□ -1.15
VPS13C-206ENST00000558338 METTL13Q8N6R0 699 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms