RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 KIFAP3Q92845 792 aa11.74□□□□□ -0.53
USP3-206ENST00000558157 MKL1Q969V6 931 aa11.74□□□□□ -0.53
USP3-206ENST00000558157 SELENOSQ9BQE4 189 aa11.74□□□□□ -0.53
USP3-206ENST00000558157 PABPC3Q9H361 631 aaKnown RBP11.74□□□□□ -0.53
USP3-206ENST00000558157 TXLNGQ9NUQ3 528 aa11.74□□□□□ -0.53
USP3-206ENST00000558157 PPP2R3BQ9Y5P8 575 aa11.74□□□□□ -0.53
USP3-206ENST00000558157 V9GY48 417 aaPredicted RBP11.74□□□□□ -0.53
USP3-206ENST00000558157 KLRF2D3W0D1 207 aa11.73□□□□□ -0.53
USP3-206ENST00000558157 KCNK3O14649 394 aa11.73□□□□□ -0.53
USP3-206ENST00000558157 RGS16O15492 202 aaPredicted RBP11.73□□□□□ -0.53
USP3-206ENST00000558157 LMNAP02545 664 aaKnown RBP11.73□□□□□ -0.53
USP3-206ENST00000558157 SP100P23497 879 aaPredicted RBP11.73□□□□□ -0.53
USP3-206ENST00000558157 MTA1Q13330 715 aa11.73□□□□□ -0.53
USP3-206ENST00000558157 HHATQ5VTY9 493 aa11.73□□□□□ -0.53
USP3-206ENST00000558157 ARHGAP18Q8N392 663 aa11.73□□□□□ -0.53
USP3-206ENST00000558157 RASGEF1CQ8N431 466 aa11.73□□□□□ -0.53
USP3-206ENST00000558157 NEK9Q8TD19 979 aa11.73□□□□□ -0.53
USP3-206ENST00000558157 STK32AQ8WU08 396 aa11.73□□□□□ -0.53
USP3-206ENST00000558157 IFT43Q96FT9 208 aa11.73□□□□□ -0.53
USP3-206ENST00000558157 MMTAG2Q9BU76 263 aaKnown RBP11.73□□□□□ -0.53
USP3-206ENST00000558157 CCSER1Q9C0I3 900 aa11.73□□□□□ -0.53
USP3-206ENST00000558157 SUDS3Q9H7L9 328 aaPredicted RBP11.73□□□□□ -0.53
USP3-206ENST00000558157 DMAP1Q9NPF5 467 aaPredicted RBP11.73□□□□□ -0.53
USP3-206ENST00000558157 FAM207AQ9NSI2 230 aaPredicted RBP11.73□□□□□ -0.53
USP3-206ENST00000558157 A0A1W2PRG0 241 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 ADM5C9JUS6 153 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 WNT7AO00755 349 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 CYTH3O43739 400 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 CREB3O43889 395 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 RAD21O60216 631 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 PENKP01210 267 aaPredicted RBP11.72□□□□□ -0.53
USP3-206ENST00000558157 RANBP1P43487 201 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 PEX5P50542 639 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 IL17AQ16552 155 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 ASPRV1Q53RT3 343 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 TDRD12Q587J7 1177 aaKnown RBP11.72□□□□□ -0.53
USP3-206ENST00000558157 NAALADL2Q58DX5 795 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 DENND2CQ68D51 928 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 TRIM68Q6AZZ1 485 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 DLK2Q6UY11 383 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 USP50Q70EL3 339 aaPredicted RBP11.72□□□□□ -0.53
USP3-206ENST00000558157 AGGF1Q8N302 714 aaeCLIP11.72□□□□□ -0.53
USP3-206ENST00000558157 SHISA4Q96DD7 197 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 TMEM237Q96Q45 408 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 PRMT1Q99873 361 aaKnown RBP11.72□□□□□ -0.53
USP3-206ENST00000558157 SYT15Q9BQS2 421 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 MMRN2Q9H8L6 949 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 GPCPD1Q9NPB8 672 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 CYP39A1Q9NYL5 469 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 CEP72Q9P209 647 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 FZD1Q9UP38 647 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 SPDYE5A6NIY4 337 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 DAPK3O43293 454 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 UNC5CO95185 931 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 KLRC1P26715 233 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 FLT3P36888 993 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 ECE1P42892 770 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 ZNF543Q08ER8 600 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 TNFAIP8L3Q5GJ75 292 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 DCAF15Q66K64 600 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 RNF43Q68DV7 783 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 TMEM154Q6P9G4 183 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 DDX42Q86XP3 938 aaKnown RBP eCLIP11.72□□□□□ -0.53
USP3-206ENST00000558157 ACER1Q8TDN7 264 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 MAIP1Q8WWC4 291 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 DCPSQ96C86 337 aaKnown RBP11.72□□□□□ -0.53
USP3-206ENST00000558157 PLEKHG4BQ96PX9 1271 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 LZTS2Q9BRK4 669 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 CCDC28BQ9BUN5 200 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 ZNF341Q9BYN7 854 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 ZMYND12Q9H0C1 365 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 SCOCQ9UIL1 159 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 TTC7AQ9ULT0 858 aaPredicted RBP11.72□□□□□ -0.53
USP3-206ENST00000558157 STK38LQ9Y2H1 464 aa11.72□□□□□ -0.53
USP3-206ENST00000558157 KRIT1O00522 736 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 EPHB6O15197 1021 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 TPBGLP0DKB5 382 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 ACVR2BQ13705 512 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 NPY5RQ15761 445 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 WASHC2DQ5SRD0 308 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 SFMBT2Q5VUG0 894 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 SLFN13Q68D06 897 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 CENPPQ6IPU0 288 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 CNNM4Q6P4Q7 775 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 KCTD1Q719H9 257 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 ASAP3Q8TDY4 903 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 PIGOQ8TEQ8 1089 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 GRAMD1AQ96CP6 724 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 SPZ1Q9BXG8 430 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 UBA5Q9GZZ9 404 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 ZWILCHQ9H900 591 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 ARHGEF10LQ9HCE6 1279 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 MROH7Q68CQ1 1323 aa11.71□□□□□ -0.53
USP3-206ENST00000558157 A8MUI8 341 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 POTECB2RU33 542 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 ZSCAN9O15535 394 aaPredicted RBP11.71□□□□□ -0.54
USP3-206ENST00000558157 CEP104O60308 925 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 ASNSP08243 561 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 PYGBP11216 843 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 SCG2P13521 617 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms