RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 GJB4Q9NTQ9 266 aa17.84■□□□□ 0.45
SCFD1-224ENST00000557713 STK36Q9NRP7 1315 aa17.83■□□□□ 0.44
SCFD1-224ENST00000557713 CCNT1O60563 726 aaKnown RBP17.83■□□□□ 0.44
SCFD1-224ENST00000557713 LILRB3O75022 631 aa17.83■□□□□ 0.44
SCFD1-224ENST00000557713 CDKL5O76039 1030 aa17.83■□□□□ 0.44
SCFD1-224ENST00000557713 BRD1O95696 1058 aa17.83■□□□□ 0.44
SCFD1-224ENST00000557713 PTPN14Q15678 1187 aa17.83■□□□□ 0.44
SCFD1-224ENST00000557713 ZDHHC14Q8IZN3 488 aa17.83■□□□□ 0.44
SCFD1-224ENST00000557713 TMEM87AQ8NBN3 555 aa17.83■□□□□ 0.44
SCFD1-224ENST00000557713 PSPC1Q8WXF1 523 aaKnown RBP17.83■□□□□ 0.44
SCFD1-224ENST00000557713 RSAD1Q9HA92 442 aa17.83■□□□□ 0.44
SCFD1-224ENST00000557713 RGL1Q9NZL6 768 aa17.83■□□□□ 0.44
SCFD1-224ENST00000557713 CNTNAP2Q9UHC6 1331 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 ASAP2O43150 1006 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 PFKFB2O60825 505 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 ALDH2P05091 517 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 YWHABP31946 246 aaKnown RBP17.82■□□□□ 0.44
SCFD1-224ENST00000557713 SPIRE1Q08AE8 756 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 MTMR3Q13615 1198 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 EARS2Q5JPH6 523 aaKnown RBP17.82■□□□□ 0.44
SCFD1-224ENST00000557713 PIK3AP1Q6ZUJ8 805 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 OTUD6AQ7L8S5 288 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 PPFIBP1Q86W92 1011 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 FEZF2Q8TBJ5 459 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 URGCPQ8TCY9 931 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 DYDC2Q96IM9 177 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 KLHL5Q96PQ7 755 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 NAP1L4Q99733 375 aaKnown RBP17.82■□□□□ 0.44
SCFD1-224ENST00000557713 LXNQ9BS40 222 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 TMEM175Q9BSA9 504 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 KANSL3Q9P2N6 904 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 STK39Q9UEW8 545 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 USTQ9Y2C2 406 aa17.82■□□□□ 0.44
SCFD1-224ENST00000557713 NRP1O14786 923 aa17.81■□□□□ 0.44
SCFD1-224ENST00000557713 ZBTB39O15060 712 aa17.81■□□□□ 0.44
SCFD1-224ENST00000557713 GAS2O43903 313 aaKnown RBP17.81■□□□□ 0.44
SCFD1-224ENST00000557713 DTNBO60941 627 aa17.81■□□□□ 0.44
SCFD1-224ENST00000557713 XBP1P17861 261 aa17.81■□□□□ 0.44
SCFD1-224ENST00000557713 NCLP19338 710 aaKnown RBP17.81■□□□□ 0.44
SCFD1-224ENST00000557713 NUBP1P53384 320 aa17.81■□□□□ 0.44
SCFD1-224ENST00000557713 EMC2Q15006 297 aa17.81■□□□□ 0.44
SCFD1-224ENST00000557713 FERMT3Q86UX7 667 aa17.81■□□□□ 0.44
SCFD1-224ENST00000557713 CABP7Q86V35 215 aa17.81■□□□□ 0.44
SCFD1-224ENST00000557713 PLCD3Q8N3E9 789 aa17.81■□□□□ 0.44
SCFD1-224ENST00000557713 SMG8Q8ND04 991 aaKnown RBP17.81■□□□□ 0.44
SCFD1-224ENST00000557713 TCP11Q8WWU5 503 aa17.81■□□□□ 0.44
SCFD1-224ENST00000557713 SMOC2Q9H3U7 446 aa17.81■□□□□ 0.44
SCFD1-224ENST00000557713 ZSWIM4Q9H7M6 989 aa17.81■□□□□ 0.44
SCFD1-224ENST00000557713 BMP2KQ9NSY1 1161 aaPredicted RBP17.81■□□□□ 0.44
SCFD1-224ENST00000557713 LIMD1Q9UGP4 676 aa17.81■□□□□ 0.44
SCFD1-224ENST00000557713 DBR1Q9UK59 544 aaKnown RBP17.81■□□□□ 0.44
SCFD1-224ENST00000557713 TPCN1Q9ULQ1 816 aa17.81■□□□□ 0.44
SCFD1-224ENST00000557713 FAN1Q9Y2M0 1017 aa17.81■□□□□ 0.44
SCFD1-224ENST00000557713 MARCH6O60337 910 aa17.8■□□□□ 0.44
SCFD1-224ENST00000557713 SLITRK3O94933 977 aa17.8■□□□□ 0.44
SCFD1-224ENST00000557713 CTDNEP1O95476 244 aa17.8■□□□□ 0.44
SCFD1-224ENST00000557713 ASGR2P07307 311 aa17.8■□□□□ 0.44
SCFD1-224ENST00000557713 CNPP09543 421 aaKnown RBP17.8■□□□□ 0.44
SCFD1-224ENST00000557713 CLCN4P51793 760 aa17.8■□□□□ 0.44
SCFD1-224ENST00000557713 CTTNQ14247 550 aaKnown RBP17.8■□□□□ 0.44
SCFD1-224ENST00000557713 XKR9Q5GH70 373 aa17.8■□□□□ 0.44
SCFD1-224ENST00000557713 NCAPH2Q6IBW4 605 aa17.8■□□□□ 0.44
SCFD1-224ENST00000557713 TMC5Q6UXY8 1006 aa17.8■□□□□ 0.44
SCFD1-224ENST00000557713 GPR149Q86SP6 731 aa17.8■□□□□ 0.44
SCFD1-224ENST00000557713 SLFN12Q8IYM2 578 aa17.8■□□□□ 0.44
SCFD1-224ENST00000557713 TDRD5Q8NAT2 981 aaKnown RBP17.8■□□□□ 0.44
SCFD1-224ENST00000557713 RNF149Q8NC42 400 aa17.8■□□□□ 0.44
SCFD1-224ENST00000557713 CNNM3Q8NE01 707 aa17.8■□□□□ 0.44
SCFD1-224ENST00000557713 EMILIN2Q9BXX0 1053 aa17.8■□□□□ 0.44
SCFD1-224ENST00000557713 IRF2BPLQ9H1B7 796 aa17.8■□□□□ 0.44
SCFD1-224ENST00000557713 UBN1Q9NPG3 1134 aa17.8■□□□□ 0.44
SCFD1-224ENST00000557713 ZDBF2Q9HCK1 2354 aa17.79■□□□□ 0.44
SCFD1-224ENST00000557713 FAM205CA6NFA0 338 aa17.79■□□□□ 0.44
SCFD1-224ENST00000557713 INPPL1O15357 1258 aa17.79■□□□□ 0.44
SCFD1-224ENST00000557713 POMCP01189 267 aa17.79■□□□□ 0.44
SCFD1-224ENST00000557713 KLRC2P26717 231 aa17.79■□□□□ 0.44
SCFD1-224ENST00000557713 FAM193BQ96PV7 902 aaPredicted RBP17.79■□□□□ 0.44
SCFD1-224ENST00000557713 SFXN1Q9H9B4 322 aa17.79■□□□□ 0.44
SCFD1-224ENST00000557713 XPNPEP1Q9NQW7 623 aa17.79■□□□□ 0.44
SCFD1-224ENST00000557713 USP34Q70CQ2 3546 aa17.78■□□□□ 0.44
SCFD1-224ENST00000557713 TSPAN1O60635 241 aa17.78■□□□□ 0.44
SCFD1-224ENST00000557713 BAG4O95429 457 aaKnown RBP17.78■□□□□ 0.44
SCFD1-224ENST00000557713 EFEMP2O95967 443 aa17.78■□□□□ 0.44
SCFD1-224ENST00000557713 SOD2P04179 222 aa17.78■□□□□ 0.44
SCFD1-224ENST00000557713 SSBP05455 408 aaKnown RBP eCLIP17.78■□□□□ 0.44
SCFD1-224ENST00000557713 ITGA4P13612 1032 aa17.78■□□□□ 0.44
SCFD1-224ENST00000557713 FDPSP14324 419 aaKnown RBP17.78■□□□□ 0.44
SCFD1-224ENST00000557713 AXLP30530 894 aa17.78■□□□□ 0.44
SCFD1-224ENST00000557713 PTENP60484 403 aa17.78■□□□□ 0.44
SCFD1-224ENST00000557713 CYP4A11Q02928 519 aa17.78■□□□□ 0.44
SCFD1-224ENST00000557713 POU5F1BQ06416 359 aa17.78■□□□□ 0.44
SCFD1-224ENST00000557713 MXD4Q14582 209 aaPredicted RBP17.78■□□□□ 0.44
SCFD1-224ENST00000557713 PCBP1Q15365 356 aaKnown RBP eCLIP17.78■□□□□ 0.44
SCFD1-224ENST00000557713 TAS1R1Q7RTX1 841 aa17.78■□□□□ 0.44
SCFD1-224ENST00000557713 IFNLR1Q8IU57 520 aaPredicted RBP17.78■□□□□ 0.44
SCFD1-224ENST00000557713 TPH2Q8IWU9 490 aa17.78■□□□□ 0.44
SCFD1-224ENST00000557713 COLGALT2Q8IYK4 626 aa17.78■□□□□ 0.44
SCFD1-224ENST00000557713 TNFRSF25Q93038 417 aa17.78■□□□□ 0.44
SCFD1-224ENST00000557713 MTRQ99707 1265 aa17.78■□□□□ 0.44
SCFD1-224ENST00000557713 HSD17B14Q9BPX1 270 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms