RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 RSAD1Q9HA92 442 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 DNAJB4Q9UDY4 337 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 PCDHA12Q9UN75 941 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 NR2E1Q9Y466 385 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 IRAK3Q9Y616 596 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 CNTNAP2Q9UHC6 1331 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 ZBTB39O15060 712 aa12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 ERLIN2O94905 339 aa12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 SLITRK3O94933 977 aa12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 HOXA11P31270 313 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 SIGLEC14Q08ET2 396 aa12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 ME3Q16798 604 aa12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 AGMOQ6ZNB7 445 aa12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 MRPL10Q7Z7H8 261 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 ZBTB33Q86T24 672 aa12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 ALYREFQ86V81 257 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 ZNF280BQ86YH2 543 aa12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 SUGP1Q8IWZ8 645 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 TNFRSF25Q93038 417 aa12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 GTF3C6Q969F1 213 aa12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 NECTIN4Q96NY8 510 aa12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 ADAM7Q9H2U9 754 aa12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 TSHZ2Q9NRE2 1034 aa12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 KANSL3Q9P2N6 904 aa12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 CDH22Q9UJ99 828 aa12.35□□□□□ -0.43
CCDC88C-213ENST00000557455 KMT2EQ8IZD2 1858 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 DDHD2O94830 711 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 LARGE1O95461 756 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 ALDH2P05091 517 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 MTHFRP42898 656 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 SLC11A1P49279 550 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 NHLH1Q02575 133 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 NCBP1Q09161 790 aaKnown RBP12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 TRIM29Q14134 588 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 MXD4Q14582 209 aaPredicted RBP12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 CALCRLQ16602 461 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 PTPN21Q16825 1174 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 UBXN11Q5T124 520 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 RARS2Q5T160 578 aaKnown RBP12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 CNNM3Q8NE01 707 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 BCL7CQ8WUZ0 217 aaPredicted RBP12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 RIPOR3Q96MK2 946 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 EIF2AK1Q9BQI3 630 aaKnown RBP12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 TMEM175Q9BSA9 504 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 POMKQ9H5K3 350 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 UBN1Q9NPG3 1134 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 DZANK1Q9NVP4 752 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 STK39Q9UEW8 545 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 FAN1Q9Y2M0 1017 aa12.34□□□□□ -0.43
CCDC88C-213ENST00000557455 BTBD18B2RXH4 712 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 B4GALT3O60512 393 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 NEMFO60524 1076 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 DGAT1O75907 488 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 POMCP01189 267 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 CENPBP07199 599 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 ITGA4P13612 1032 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 EPCAMP16422 314 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 NCLP19338 710 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 AXLP30530 894 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 TXKP42681 527 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 AFF1P51825 1210 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 TFDP1Q14186 410 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 PCBP1Q15365 356 aaKnown RBP eCLIP12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 PTPN14Q15678 1187 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 PPFIBP1Q86W92 1011 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 DIS3L2Q8IYB7 885 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 FBXL6Q8N531 539 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 C12orf76Q8N812 135 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 NSUN7Q8NE18 718 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 CCDC43Q96MW1 224 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 HSD17B14Q9BPX1 270 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 TTC12Q9H892 705 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 XPNPEP1Q9NQW7 623 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 ANKEF1Q9NU02 776 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 PPP4R2Q9NY27 417 aa12.33□□□□□ -0.44
CCDC88C-213ENST00000557455 C2orf16Q68DN1 1984 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 DENND4AQ7Z401 1863 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 SPDYE4A6NLX3 237 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 C2CD4DB7Z1M9 353 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 INO80B-WBP1J3KQ70 363 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 NRP1O14786 923 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 TSPAN1O60635 241 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 EIF5BO60841 1220 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 LYPLA2O95372 231 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 SSBP05455 408 aaKnown RBP eCLIP12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 WEE2P0C1S8 567 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 KLRC2P26717 231 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 NEK4P51957 841 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 FOSBP53539 338 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 PTENP60484 403 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 POU5F1BQ06416 359 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 ATAT1Q5SQI0 421 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 KIAA1841Q6NSI8 718 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 NOTUMQ6P988 496 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 CABP7Q86V35 215 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 KREMEN2Q8NCW0 462 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 SMG8Q8ND04 991 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 SLC22A17Q8WUG5 538 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 CCDC51Q96ER9 411 aa12.32□□□□□ -0.44
CCDC88C-213ENST00000557455 ASIC4Q96FT7 647 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms