RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 TSHZ2Q9NRE2 1034 aa13.79□□□□□ -0.2
SLIRP-209ENST00000557342 STK17AQ9UEE5 414 aa13.79□□□□□ -0.2
SLIRP-209ENST00000557342 PCDHB2Q9Y5E7 798 aa13.79□□□□□ -0.2
SLIRP-209ENST00000557342 PLXNA4Q9HCM2 1894 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 CCDC169A6NNP5 214 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 LPXNO60711 386 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 BRD1O95696 1058 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 PRKCBP05771 671 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 LINC00271P0C7V0 271 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 ATF7P17544 494 aaPredicted RBP13.78□□□□□ -0.2
SLIRP-209ENST00000557342 ARF4P18085 180 aaPredicted RBP13.78□□□□□ -0.2
SLIRP-209ENST00000557342 NCLP19338 710 aaKnown RBP13.78□□□□□ -0.2
SLIRP-209ENST00000557342 DDIT3P35638 169 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 PEX3P56589 373 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 GPM6BQ13491 265 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 PTPROQ16827 1216 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 CSPP1Q1MSJ5 1256 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 TMEM132AQ24JP5 1023 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 RRAGBQ5VZM2 374 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 GLB1LQ6UWU2 654 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 CCDC73Q6ZRK6 1079 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 MRPL10Q7Z7H8 261 aaKnown RBP13.78□□□□□ -0.2
SLIRP-209ENST00000557342 GDPD5Q8WTR4 605 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 LARP4BQ92615 738 aaKnown RBP13.78□□□□□ -0.2
SLIRP-209ENST00000557342 P2RX5Q93086 422 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 CPB2Q96IY4 423 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 CASD1Q96PB1 797 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 TRIM6Q9C030 488 aaPredicted RBP13.78□□□□□ -0.2
SLIRP-209ENST00000557342 UBN1Q9NPG3 1134 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 KMT5AQ9NQR1 393 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 BLOC1S4Q9NUP1 217 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 RNF19AQ9NV58 838 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 ODF2LQ9ULJ1 636 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 RBM19Q9Y4C8 960 aaKnown RBP13.78□□□□□ -0.2
SLIRP-209ENST00000557342 PCDHB12Q9Y5F1 795 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 ATP6V1DQ9Y5K8 247 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 MTCH2Q9Y6C9 303 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 CNTNAP2Q9UHC6 1331 aa13.78□□□□□ -0.2
SLIRP-209ENST00000557342 A0A1B0GUA9 196 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 CARNS1A5YM72 827 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 K7ERI5 159 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 ACKR2O00590 384 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 N4BP3O15049 544 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 CUTAO60888 179 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 KRT18P05783 430 aaKnown RBP13.77□□□□□ -0.21
SLIRP-209ENST00000557342 PLS3P13797 630 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 LAG3P18627 525 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 NPTX2P47972 431 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 SMTNP53814 917 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 MAPK7Q13164 816 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 PRPF4BQ13523 1007 aaKnown RBP13.77□□□□□ -0.21
SLIRP-209ENST00000557342 DHX8Q14562 1220 aaKnown RBP13.77□□□□□ -0.21
SLIRP-209ENST00000557342 MCM6Q14566 821 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 ATG2AQ2TAZ0 1938 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 FOXD4L6Q3SYB3 417 aaPredicted RBP13.77□□□□□ -0.21
SLIRP-209ENST00000557342 CLLU1OSQ5K130 101 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 UBXN11Q5T124 520 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 SLC27A1Q6PCB7 646 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 FOXD4L3Q6VB84 417 aaPredicted RBP13.77□□□□□ -0.21
SLIRP-209ENST00000557342 USP49Q70CQ1 688 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 GPBP1Q86WP2 473 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 DAW1Q8N136 415 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 HELQQ8TDG4 1101 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 ADPGKQ9BRR6 497 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 NTPCRQ9BSD7 190 aaKnown RBP13.77□□□□□ -0.21
SLIRP-209ENST00000557342 CCDC113Q9H0I3 377 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 LMAN2LQ9H0V9 348 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 TMEM134Q9H6X4 195 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 POLD4Q9HCU8 107 aa13.77□□□□□ -0.21
SLIRP-209ENST00000557342 TYW1Q9NV66 732 aaKnown RBP13.77□□□□□ -0.21
SLIRP-209ENST00000557342 LARSQ9P2J5 1176 aaKnown RBP13.77□□□□□ -0.21
SLIRP-209ENST00000557342 H0YCG3 227 aa13.76□□□□□ -0.21
SLIRP-209ENST00000557342 B4GALT5O43286 388 aa13.76□□□□□ -0.21
SLIRP-209ENST00000557342 ITGA4P13612 1032 aa13.76□□□□□ -0.21
SLIRP-209ENST00000557342 LIG1P18858 919 aa13.76□□□□□ -0.21
SLIRP-209ENST00000557342 SCP2P22307 547 aa13.76□□□□□ -0.21
SLIRP-209ENST00000557342 DNM1Q05193 864 aaKnown RBP13.76□□□□□ -0.21
SLIRP-209ENST00000557342 RAD51AP2Q09MP3 1159 aa13.76□□□□□ -0.21
SLIRP-209ENST00000557342 ARSHQ5FYA8 562 aa13.76□□□□□ -0.21
SLIRP-209ENST00000557342 APBB1IPQ7Z5R6 666 aaPredicted RBP13.76□□□□□ -0.21
SLIRP-209ENST00000557342 URGCPQ8TCY9 931 aa13.76□□□□□ -0.21
SLIRP-209ENST00000557342 SPIRE2Q8WWL2 714 aa13.76□□□□□ -0.21
SLIRP-209ENST00000557342 LPPQ93052 612 aa13.76□□□□□ -0.21
SLIRP-209ENST00000557342 MRPL38Q96DV4 380 aaKnown RBP13.76□□□□□ -0.21
SLIRP-209ENST00000557342 KIFC3Q9BVG8 833 aa13.76□□□□□ -0.21
SLIRP-209ENST00000557342 CWH43Q9H720 699 aa13.76□□□□□ -0.21
SLIRP-209ENST00000557342 RSAD1Q9HA92 442 aa13.76□□□□□ -0.21
SLIRP-209ENST00000557342 ARHGAP28Q9P2N2 729 aa13.76□□□□□ -0.21
SLIRP-209ENST00000557342 KANSL3Q9P2N6 904 aa13.76□□□□□ -0.21
SLIRP-209ENST00000557342 IPPQ9Y573 584 aa13.76□□□□□ -0.21
SLIRP-209ENST00000557342 CDH23Q9H251 3354 aa13.75□□□□□ -0.21
SLIRP-209ENST00000557342 SFI1A8K8P3 1242 aa13.75□□□□□ -0.21
SLIRP-209ENST00000557342 OFD1O75665 1012 aa13.75□□□□□ -0.21
SLIRP-209ENST00000557342 FAM13AO94988 1023 aa13.75□□□□□ -0.21
SLIRP-209ENST00000557342 NPTXRO95502 500 aa13.75□□□□□ -0.21
SLIRP-209ENST00000557342 STAT6P42226 847 aa13.75□□□□□ -0.21
SLIRP-209ENST00000557342 KRT85P78386 507 aa13.75□□□□□ -0.21
SLIRP-209ENST00000557342 LONRF3Q496Y0 759 aa13.75□□□□□ -0.21
SLIRP-209ENST00000557342 NOMO2Q5JPE7 1267 aa13.75□□□□□ -0.21
SLIRP-209ENST00000557342 AGMOQ6ZNB7 445 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms