RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 TMEM134Q9H6X4 195 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 UBN1Q9NPG3 1134 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 KMT5AQ9NQR1 393 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 LMCD1Q9NZU5 365 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 STK17AQ9UEE5 414 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 RCOR1Q9UKL0 485 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 MTUS1Q9ULD2 1270 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 ODF2LQ9ULJ1 636 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 RBM19Q9Y4C8 960 aaKnown RBP11.8□□□□□ -0.52
LINC00239-201ENST00000556973 PCDHB2Q9Y5E7 798 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 KIAA1671Q9BY89 1806 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 PHLPP2Q6ZVD8 1323 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 EPOPA6NHQ4 379 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 TBKBP1A7MCY6 615 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 SFI1A8K8P3 1242 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 H3BNC9 293 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 ACKR2O00590 384 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 GTPBP6O43824 516 aaPredicted RBP11.79□□□□□ -0.52
LINC00239-201ENST00000556973 LINC00271P0C7V0 271 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 PLS3P13797 630 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 ATF7P17544 494 aaPredicted RBP11.79□□□□□ -0.52
LINC00239-201ENST00000556973 NCLP19338 710 aaKnown RBP11.79□□□□□ -0.52
LINC00239-201ENST00000556973 NPTX2P47972 431 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 GATMP50440 423 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 SMTNP53814 917 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 RAD51AP2Q09MP3 1159 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 MAPK7Q13164 816 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 DMP1Q13316 513 aaPredicted RBP11.79□□□□□ -0.52
LINC00239-201ENST00000556973 PRPF4BQ13523 1007 aaKnown RBP11.79□□□□□ -0.52
LINC00239-201ENST00000556973 ADGRE1Q14246 886 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 DHX8Q14562 1220 aaKnown RBP11.79□□□□□ -0.52
LINC00239-201ENST00000556973 NAALADL2Q58DX5 795 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 SPOUT1Q5T280 376 aaKnown RBP11.79□□□□□ -0.52
LINC00239-201ENST00000556973 SLC27A1Q6PCB7 646 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 RNF169Q8NCN4 708 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 LRRC15Q8TF66 581 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 SPIRE2Q8WWL2 714 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 CPB2Q96IY4 423 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 PLVAPQ9BX97 442 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 CCDC113Q9H0I3 377 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 AAASQ9NRG9 546 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 RNF19AQ9NV58 838 aa11.79□□□□□ -0.52
LINC00239-201ENST00000556973 TYW1Q9NV66 732 aaKnown RBP11.79□□□□□ -0.52
LINC00239-201ENST00000556973 LARSQ9P2J5 1176 aaKnown RBP11.79□□□□□ -0.52
LINC00239-201ENST00000556973 MRPL42Q9Y6G3 142 aaKnown RBP11.79□□□□□ -0.52
LINC00239-201ENST00000556973 COL4A4P53420 1690 aaPredicted RBP11.78□□□□□ -0.52
LINC00239-201ENST00000556973 NPHP3-ACAD11A0A0J9YXS1 232 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 B4GALT5O43286 388 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 OFD1O75665 1012 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 PRKCBP05771 671 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 CTNNB1P35222 781 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 KRT85P78386 507 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 NUCB2P80303 420 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 GPM6BQ13491 265 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 GIT2Q14161 759 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 CLLU1OSQ5K130 101 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 GLB1LQ6UWU2 654 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 SV2BQ7L1I2 683 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 GPBP1Q86WP2 473 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 P2RX5Q93086 422 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 C11orf84Q9BUA3 381 aaPredicted RBP11.78□□□□□ -0.52
LINC00239-201ENST00000556973 MRPL9Q9BYD2 267 aaKnown RBP11.78□□□□□ -0.52
LINC00239-201ENST00000556973 PANK2Q9BZ23 570 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 TRIM6Q9C030 488 aaPredicted RBP11.78□□□□□ -0.52
LINC00239-201ENST00000556973 PCDHA7Q9UN72 937 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 PCDHB12Q9Y5F1 795 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 MTCH2Q9Y6C9 303 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 CNTNAP2Q9UHC6 1331 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 TCHHQ07283 1943 aa11.78□□□□□ -0.52
LINC00239-201ENST00000556973 H0YCG3 227 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 N4BP3O15049 544 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 SLC16A4O15374 487 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 LPXNO60711 386 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 KRT18P05783 430 aaKnown RBP11.77□□□□□ -0.53
LINC00239-201ENST00000556973 ITGA4P13612 1032 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 LIG1P18858 919 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 SCP2P22307 547 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 STAT6P42226 847 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 ME1P48163 572 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 PTPROQ16827 1216 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 TMEM132AQ24JP5 1023 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 LONRF3Q496Y0 759 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 AXDND1Q5T1B0 1012 aaPredicted RBP11.77□□□□□ -0.53
LINC00239-201ENST00000556973 SHC4Q6S5L8 630 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 AGMOQ6ZNB7 445 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 LRRC55Q6ZSA7 311 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 HACE1Q8IYU2 909 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 LRRC43Q8N309 656 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 SMG8Q8ND04 991 aaKnown RBP11.77□□□□□ -0.53
LINC00239-201ENST00000556973 MAFAQ8NHW3 353 aaPredicted RBP11.77□□□□□ -0.53
LINC00239-201ENST00000556973 HELQQ8TDG4 1101 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 LPPQ93052 612 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 SPATA32Q96LK8 384 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 REEP2Q9BRK0 252 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 ADPGKQ9BRR6 497 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 KIFC3Q9BVG8 833 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 EIF2AQ9BY44 585 aaKnown RBP11.77□□□□□ -0.53
LINC00239-201ENST00000556973 CWH43Q9H720 699 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 FAM13BQ9NYF5 915 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 ARHGAP28Q9P2N2 729 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms