RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 NOTUMQ6P988 496 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 CDR2LQ86X02 465 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 ECHDC2Q86YB7 292 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 ABI1Q8IZP0 508 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 FSIP1Q8NA03 581 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 PRIMPOLQ96LW4 560 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 TRIM6Q9C030 488 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 TNMDQ9H2S6 317 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 FZD8Q9H461 694 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 FAM105AQ9NUU6 356 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 TMEM161AQ9NX61 479 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 USP20Q9Y2K6 914 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 TTC3P53804 2025 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 A0A0U1RQF3 1178 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 A0A1W2PQ27 194 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 A0A1W2PQ64 194 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 A0A1W2PQD8 194 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 TBKBP1A7MCY6 615 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 K7ENM7 598 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 ACKR2O00590 384 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 TRAK2O60296 914 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 DGKIO75912 1065 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 FGFR1P11362 822 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 SYKP43405 635 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 AFMP43652 599 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 GATMP50440 423 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 FAM189BP81408 668 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 HTRA4P83105 476 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 AMHR2Q16671 573 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 CSPP1Q1MSJ5 1256 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 PPP4R3CPQ6ZMV5 832 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 Q7L0L9 218 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 FAM178BQ8IXR5 827 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 FIBCD1Q8N539 461 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 SPIRE2Q8WWL2 714 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 MRPS27Q92552 414 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 CCDC51Q96ER9 411 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 APOL6Q9BWW8 343 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 CCDC113Q9H0I3 377 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 ZNF576Q9H609 170 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 ELAC1Q9H777 363 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 CERS4Q9HA82 394 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 SERTAD1Q9UHV2 236 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 MTUS1Q9ULD2 1270 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 PCDHB2Q9Y5E7 798 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 PHLPP2Q6ZVD8 1323 aa12.61□□□□□ -0.39
CCDC88C-212ENST00000556767 H0YCG3 227 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 N4BP3O15049 544 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 HOXA2O43364 376 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 NPTXRO95502 500 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 EOMESO95936 686 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 GAP43P17677 238 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 NDUFA8P51970 172 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 ASIC1P78348 528 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 FAM187BQ17R55 369 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 HERC4Q5GLZ8 1057 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 UBXN11Q5T124 520 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 SPOUT1Q5T280 376 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 GPR153Q6NV75 609 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 HAUS6Q7Z4H7 955 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 SFR1Q86XK3 245 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 DEFB123Q8N688 67 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 LPPQ93052 612 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 PGBD4Q96DM1 585 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 ADPGKQ9BRR6 497 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 NTPCRQ9BSD7 190 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 EIF2AQ9BY44 585 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 MRPL4Q9BYD3 311 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 BLZF1Q9H2G9 400 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 TMEM134Q9H6X4 195 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 MAGEF1Q9HAY2 307 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 PANK4Q9NVE7 773 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 KBTBD4Q9NVX7 518 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 TBC1D7Q9P0N9 293 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 ARHGAP28Q9P2N2 729 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 CNTNAP2Q9UHC6 1331 aa12.6□□□□□ -0.39
CCDC88C-212ENST00000556767 TMEM265A0A087WTH1 108 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 A0A1B0GUA9 196 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 LINC01553A4QN01 128 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 TTLL13PA6NNM8 815 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 ARHGEF15O94989 841 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 MAPTP10636 758 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 ITGA4P13612 1032 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 NMT1P30419 496 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 ZNF131P52739 623 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 NCKAP1LP55160 1127 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 TAP1Q03518 808 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 NT5DC1Q5TFE4 455 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 ATF7IP2Q5U623 682 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 SLC27A1Q6PCB7 646 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 CCDC65Q8IXS2 484 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 CMTR2Q8IYT2 770 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 HACE1Q8IYU2 909 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 CRIPAKQ8N1N5 446 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 TMEM161BQ8NDZ6 487 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 CNNM3Q8NE01 707 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 HELQQ8TDG4 1101 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 ARNTL2Q8WYA1 636 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 DNAJC19Q96DA6 116 aa12.59□□□□□ -0.39
CCDC88C-212ENST00000556767 BICD1Q96G01 975 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms