RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 PTPRN2Q92932 1015 aa6.14□□□□□ -1.43
SRP54-211ENST00000556445 KISS1RQ969F8 398 aaPredicted RBP6.14□□□□□ -1.43
SRP54-211ENST00000556445 KCNJ15Q99712 375 aa6.14□□□□□ -1.43
SRP54-211ENST00000556445 CDC6Q99741 560 aa6.14□□□□□ -1.43
SRP54-211ENST00000556445 PDGFDQ9GZP0 370 aaPredicted RBP6.14□□□□□ -1.43
SRP54-211ENST00000556445 ADAM7Q9H2U9 754 aa6.14□□□□□ -1.43
SRP54-211ENST00000556445 IPPKQ9H8X2 491 aa6.14□□□□□ -1.43
SRP54-211ENST00000556445 HSPBP1Q9NZL4 362 aa6.14□□□□□ -1.43
SRP54-211ENST00000556445 INTUQ9ULD6 942 aa6.14□□□□□ -1.43
SRP54-211ENST00000556445 NOB1Q9ULX3 412 aaKnown RBP6.14□□□□□ -1.43
SRP54-211ENST00000556445 CACNA1FO60840 1977 aa6.14□□□□□ -1.43
SRP54-211ENST00000556445 MAP3K5Q99683 1374 aa6.14□□□□□ -1.43
SRP54-211ENST00000556445 ADAMTS20P59510 1910 aa6.13□□□□□ -1.43
SRP54-211ENST00000556445 NKRFO15226 690 aaKnown RBP eCLIP6.13□□□□□ -1.43
SRP54-211ENST00000556445 TRIM27P14373 513 aa6.13□□□□□ -1.43
SRP54-211ENST00000556445 RTP5Q14D33 572 aa6.13□□□□□ -1.43
SRP54-211ENST00000556445 MTHFSDQ2M296 383 aaKnown RBP6.13□□□□□ -1.43
SRP54-211ENST00000556445 TM4SF20Q53R12 229 aa6.13□□□□□ -1.43
SRP54-211ENST00000556445 INO80DQ53TQ3 878 aaPredicted RBP6.13□□□□□ -1.43
SRP54-211ENST00000556445 ITPRIPQ8IWB1 547 aa6.13□□□□□ -1.43
SRP54-211ENST00000556445 RBM12BQ8IXT5 1001 aaKnown RBP6.13□□□□□ -1.43
SRP54-211ENST00000556445 FBXO41Q8TF61 875 aa6.13□□□□□ -1.43
SRP54-211ENST00000556445 TEPSINQ96N21 525 aa6.13□□□□□ -1.43
SRP54-211ENST00000556445 DHRS4Q9BTZ2 278 aa6.13□□□□□ -1.43
SRP54-211ENST00000556445 LZTS1Q9Y250 596 aa6.13□□□□□ -1.43
SRP54-211ENST00000556445 MRPS23Q9Y3D9 190 aaKnown RBP6.13□□□□□ -1.43
SRP54-211ENST00000556445 TELO2Q9Y4R8 837 aa6.13□□□□□ -1.43
SRP54-211ENST00000556445 CD2APQ9Y5K6 639 aa6.13□□□□□ -1.43
SRP54-211ENST00000556445 PTPRCP08575 1304 aa6.13□□□□□ -1.43
SRP54-211ENST00000556445 NCAPD2Q15021 1401 aa6.13□□□□□ -1.43
SRP54-211ENST00000556445 LMTK3Q96Q04 1460 aa6.13□□□□□ -1.43
SRP54-211ENST00000556445 ALS2Q96Q42 1657 aa6.13□□□□□ -1.43
SRP54-211ENST00000556445 CCDC163A0A0D9SF12 145 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 OVOS2A0A0G2JMS6 1433 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 STRCP1A6NGW2 1772 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 FAM47E-STBD1D6RA91 191 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 AQP7O14520 342 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 WNT9AO14904 365 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 EPB41L2O43491 1005 aaKnown RBP6.12□□□□□ -1.43
SRP54-211ENST00000556445 RASGRP1O95267 797 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 ASMTLO95671 621 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 FAM163BP0C2L3 166 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 GNAT1P11488 350 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 COPB2P35606 906 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 ANP32AP39687 249 aaKnown RBP6.12□□□□□ -1.43
SRP54-211ENST00000556445 RAB27AP51159 221 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 CRB1P82279 1406 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 SPIRE1Q08AE8 756 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 TUSC3Q13454 348 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 MORC3Q14149 939 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 TAF7Q15545 349 aaPredicted RBP6.12□□□□□ -1.43
SRP54-211ENST00000556445 TNS3Q68CZ2 1445 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 PROSER1Q86XN7 944 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 TRIM48Q8IWZ4 208 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 CHPFQ8IZ52 775 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 PAF1Q8N7H5 531 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 CXorf38Q8TB03 319 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 ADAMTS17Q8TE56 1095 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 ALG1Q9BT22 464 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 STK31Q9BXU1 1019 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 RBPJLQ9UBG7 517 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 TSPYL4Q9UJ04 414 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 MCM8Q9UJA3 840 aa6.12□□□□□ -1.43
SRP54-211ENST00000556445 FAM208AQ9UK61 1670 aaKnown RBP6.12□□□□□ -1.43
SRP54-211ENST00000556445 CAMTA1Q9Y6Y1 1673 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 LRRC37A3O60309 1634 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 MED1Q15648 1581 aaPredicted RBP6.11□□□□□ -1.43
SRP54-211ENST00000556445 TCRBV5S4A2TA0A5A2 114 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 FAM83GA6ND36 823 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 ARVCFO00192 962 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 PRICKLE3O43900 615 aaPredicted RBP6.11□□□□□ -1.43
SRP54-211ENST00000556445 FOXD2O60548 495 aaPredicted RBP6.11□□□□□ -1.43
SRP54-211ENST00000556445 LTFP02788 710 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 HOXB7P09629 217 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 HSPA2P54652 639 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 GABREP78334 506 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 NFKB2Q00653 900 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 POU5F1Q01860 360 aaKnown RBP6.11□□□□□ -1.43
SRP54-211ENST00000556445 GRIN1Q05586 938 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 GRAMD1BQ3KR37 738 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 C1orf141Q5JVX7 400 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 CCDC30Q5VVM6 783 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 KSR2Q6VAB6 950 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 MCM10Q7L590 875 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 PCDH19Q8TAB3 1148 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 SH3RF2Q8TEC5 729 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 E2F7Q96AV8 911 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 LTV1Q96GA3 475 aaPredicted RBP6.11□□□□□ -1.43
SRP54-211ENST00000556445 THUMPD2Q9BTF0 503 aaKnown RBP6.11□□□□□ -1.43
SRP54-211ENST00000556445 ZHX3Q9H4I2 956 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 CAAP1Q9H8G2 361 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 ZIM2Q9NZV7 527 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 ZNF69Q9UC07 566 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 PTCH2Q9Y6C5 1203 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 STRCQ7RTU9 1775 aa6.11□□□□□ -1.43
SRP54-211ENST00000556445 CPDO75976 1380 aa6.1□□□□□ -1.43
SRP54-211ENST00000556445 NCANO14594 1321 aa6.1□□□□□ -1.43
SRP54-211ENST00000556445 ABCC4O15439 1325 aa6.1□□□□□ -1.43
SRP54-211ENST00000556445 SPATA31A3Q5VYP0 1347 aa6.1□□□□□ -1.43
SRP54-211ENST00000556445 A0A087X0B3 334 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms