RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 VPS9D1Q9Y2B5 631 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 PTPRUQ92729 1446 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 SPAG7O75391 227 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 PLS3P13797 630 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 CD58P19256 250 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 YWHAHQ04917 246 aaPredicted RBP11.39□□□□□ -0.59
ACTN1-216ENST00000556083 TSTA3Q13630 321 aaPredicted RBP11.39□□□□□ -0.59
ACTN1-216ENST00000556083 CTTNQ14247 550 aaKnown RBP11.39□□□□□ -0.59
ACTN1-216ENST00000556083 C11orf57Q6ZUT1 292 aaPredicted RBP11.39□□□□□ -0.59
ACTN1-216ENST00000556083 SNX19Q92543 992 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 USP13Q92995 863 aaPredicted RBP11.39□□□□□ -0.59
ACTN1-216ENST00000556083 OPTNQ96CV9 577 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 RIT2Q99578 217 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 POLR3CQ9BUI4 534 aaPredicted RBP11.39□□□□□ -0.59
ACTN1-216ENST00000556083 SAMSN1Q9NSI8 373 aaKnown RBP11.39□□□□□ -0.59
ACTN1-216ENST00000556083 RRN3P2A6NIE6 340 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 CLGNO14967 610 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 CYP2C8P10632 490 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 RBP5P82980 135 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 NFX1Q12986 1120 aaKnown RBP11.39□□□□□ -0.59
ACTN1-216ENST00000556083 RCN2Q14257 317 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 CASP8Q14790 479 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 THNSL1Q8IYQ7 743 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 ARHGAP18Q8N392 663 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 TACO1Q9BSH4 297 aaKnown RBP11.39□□□□□ -0.59
ACTN1-216ENST00000556083 SLC9A2Q9UBY0 812 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 ZNRF3Q9ULT6 936 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 ZMYM2Q9UBW7 1377 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 IFT88Q13099 833 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 UBE2SQ16763 222 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 FAM83BQ5T0W9 1011 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 ANKS3Q6ZW76 656 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 CD302Q8IX05 232 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 SYNE4Q8N205 404 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 CHST13Q8NET6 341 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 CALML6Q8TD86 181 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 DYNLL2Q96FJ2 89 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 PARK7Q99497 189 aaKnown RBP11.39□□□□□ -0.59
ACTN1-216ENST00000556083 SMG5Q9UPR3 1016 aaKnown RBP11.39□□□□□ -0.59
ACTN1-216ENST00000556083 CPDO75976 1380 aa11.39□□□□□ -0.59
ACTN1-216ENST00000556083 ITIH6Q6UXX5 1313 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 PITPNM2Q9BZ72 1349 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 RNF17Q9BXT8 1623 aaKnown RBP11.38□□□□□ -0.59
ACTN1-216ENST00000556083 CYP27B1O15528 508 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 ZNF18P17022 549 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 PNPLA4P41247 253 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 GPSM2P81274 684 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 TMPRSS15P98073 1019 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 CAPN12Q6ZSI9 719 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 ADAT2Q7Z6V5 191 aaKnown RBP11.38□□□□□ -0.59
ACTN1-216ENST00000556083 PATL1Q86TB9 770 aaKnown RBP11.38□□□□□ -0.59
ACTN1-216ENST00000556083 ZNF564Q8TBZ8 553 aaPredicted RBP11.38□□□□□ -0.59
ACTN1-216ENST00000556083 SH3RF3Q8TEJ3 882 aaPredicted RBP11.38□□□□□ -0.59
ACTN1-216ENST00000556083 TRIM4Q9C037 500 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 RRAGDQ9NQL2 400 aaPredicted RBP11.38□□□□□ -0.59
ACTN1-216ENST00000556083 DYRK4Q9NR20 520 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 PIK3R2O00459 728 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 ALDH1A1P00352 501 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 MAPRE1Q15691 268 aaKnown RBP11.38□□□□□ -0.59
ACTN1-216ENST00000556083 NBPF20Q3BBV1 942 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 RCOR2Q8IZ40 523 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 ENAHQ8N8S7 591 aaPredicted RBP11.38□□□□□ -0.59
ACTN1-216ENST00000556083 LZICQ8WZA0 190 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 DACT3Q96B18 629 aaPredicted RBP11.38□□□□□ -0.59
ACTN1-216ENST00000556083 LY9Q9HBG7 655 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 PCDHGB4Q9UN71 923 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 TRPM1Q7Z4N2 1603 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 SETBP1Q9Y6X0 1596 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 FTCDO95954 541 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 GNA15P30679 374 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 RWDD4Q6NW29 188 aaKnown RBP11.38□□□□□ -0.59
ACTN1-216ENST00000556083 SNF8Q96H20 258 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 PARD6BQ9BYG5 372 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 NOP53Q9NZM5 478 aaKnown RBP11.38□□□□□ -0.59
ACTN1-216ENST00000556083 AGO2Q9UKV8 859 aaKnown RBP11.38□□□□□ -0.59
ACTN1-216ENST00000556083 NOVA2Q9UNW9 492 aaKnown RBP11.38□□□□□ -0.59
ACTN1-216ENST00000556083 LRRIQ3A6PVS8 624 aaPredicted RBP11.38□□□□□ -0.59
ACTN1-216ENST00000556083 RTN2O75298 545 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 CDH2P19022 906 aaPredicted RBP11.38□□□□□ -0.59
ACTN1-216ENST00000556083 GCKP35557 465 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 IFNAR2P48551 515 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 UBXN2AP68543 259 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 ROR1Q01973 937 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 QRICH1Q2TAL8 776 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 IER5Q5VY09 327 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 TMCO5AQ8N6Q1 288 aa11.38□□□□□ -0.59
ACTN1-216ENST00000556083 CROCC2H7BZ55 1655 aa11.37□□□□□ -0.59
ACTN1-216ENST00000556083 HGSO14964 777 aaPredicted RBP11.37□□□□□ -0.59
ACTN1-216ENST00000556083 PSMA3P25788 255 aa11.37□□□□□ -0.59
ACTN1-216ENST00000556083 PCSK1P29120 753 aa11.37□□□□□ -0.59
ACTN1-216ENST00000556083 C12orf60Q5U649 245 aa11.37□□□□□ -0.59
ACTN1-216ENST00000556083 BTBD8Q5XKL5 378 aa11.37□□□□□ -0.59
ACTN1-216ENST00000556083 DCP1BQ8IZD4 617 aaKnown RBP11.37□□□□□ -0.59
ACTN1-216ENST00000556083 GANCQ8TET4 914 aa11.37□□□□□ -0.59
ACTN1-216ENST00000556083 ASIC4Q96FT7 647 aa11.37□□□□□ -0.59
ACTN1-216ENST00000556083 INTS2Q9H0H0 1204 aaKnown RBP11.37□□□□□ -0.59
ACTN1-216ENST00000556083 SP110Q9HB58 689 aa11.37□□□□□ -0.59
ACTN1-216ENST00000556083 SAYSD1Q9NPB0 183 aa11.37□□□□□ -0.59
ACTN1-216ENST00000556083 PNPLA6Q8IY17 1366 aa11.37□□□□□ -0.59
ACTN1-216ENST00000556083 PSMC1P62191 440 aaKnown RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms