RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 SLITRK3O94933 977 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 BAG4O95429 457 aaKnown RBP12.81□□□□□ -0.36
NEK3-204ENST00000552973 LARGE1O95461 756 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 HOXA11P31270 313 aaPredicted RBP12.81□□□□□ -0.36
NEK3-204ENST00000552973 KRT2P35908 639 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 RFC5P40937 340 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 VCPP55072 806 aaKnown RBP12.81□□□□□ -0.36
NEK3-204ENST00000552973 EMC2Q15006 297 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 UBXN11Q5T124 520 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 SRGAP1Q7Z6B7 1085 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 FERMT3Q86UX7 667 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 FBXL6Q8N531 539 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 URGCPQ8TCY9 931 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 ASIC4Q96FT7 647 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 FAM193BQ96PV7 902 aaPredicted RBP12.81□□□□□ -0.36
NEK3-204ENST00000552973 MTRQ99707 1265 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 NAP1L4Q99733 375 aaKnown RBP12.81□□□□□ -0.36
NEK3-204ENST00000552973 VN1R3Q9BXE9 311 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 SMOC2Q9H3U7 446 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 ZSWIM4Q9H7M6 989 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 RSAD1Q9HA92 442 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 PDGFBP01127 241 aaPredicted RBP12.8□□□□□ -0.36
NEK3-204ENST00000552973 ALDH2P05091 517 aa12.8□□□□□ -0.36
NEK3-204ENST00000552973 MYBP10242 640 aa12.8□□□□□ -0.36
NEK3-204ENST00000552973 ITIH3Q06033 890 aa12.8□□□□□ -0.36
NEK3-204ENST00000552973 SPIRE1Q08AE8 756 aa12.8□□□□□ -0.36
NEK3-204ENST00000552973 ME3Q16798 604 aa12.8□□□□□ -0.36
NEK3-204ENST00000552973 TMC5Q6UXY8 1006 aa12.8□□□□□ -0.36
NEK3-204ENST00000552973 MRPL10Q7Z7H8 261 aaKnown RBP12.8□□□□□ -0.36
NEK3-204ENST00000552973 EXOC8Q8IYI6 725 aa12.8□□□□□ -0.36
NEK3-204ENST00000552973 KREMEN2Q8NCW0 462 aa12.8□□□□□ -0.36
NEK3-204ENST00000552973 SLC22A17Q8WUG5 538 aa12.8□□□□□ -0.36
NEK3-204ENST00000552973 TCP11Q8WWU5 503 aa12.8□□□□□ -0.36
NEK3-204ENST00000552973 WASF1Q92558 559 aa12.8□□□□□ -0.36
NEK3-204ENST00000552973 CPB2Q96IY4 423 aa12.8□□□□□ -0.36
NEK3-204ENST00000552973 EIF2AK1Q9BQI3 630 aaKnown RBP12.8□□□□□ -0.36
NEK3-204ENST00000552973 EIF2AQ9BY44 585 aaKnown RBP12.8□□□□□ -0.36
NEK3-204ENST00000552973 RNF39Q9H2S5 420 aa12.8□□□□□ -0.36
NEK3-204ENST00000552973 XPNPEP1Q9NQW7 623 aa12.8□□□□□ -0.36
NEK3-204ENST00000552973 DBR1Q9UK59 544 aaKnown RBP12.8□□□□□ -0.36
NEK3-204ENST00000552973 FAN1Q9Y2M0 1017 aa12.8□□□□□ -0.36
NEK3-204ENST00000552973 PRG3Q9Y2Y8 225 aaPredicted RBP12.8□□□□□ -0.36
NEK3-204ENST00000552973 NR2E1Q9Y466 385 aa12.8□□□□□ -0.36
NEK3-204ENST00000552973 SPDYE4A6NLX3 237 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 BTBD18B2RXH4 712 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 WNT7AO00755 349 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 C2CD2LO14523 706 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 NRP1O14786 923 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 ASAP2O43150 1006 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 JAK2O60674 1132 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 ERLIN2O94905 339 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 ASGR2P07307 311 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 ITGA4P13612 1032 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 KLRC2P26717 231 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 TXKP42681 527 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 MTHFRP42898 656 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 GIT2Q14161 759 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 ANKRD1Q15327 319 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 PTPN14Q15678 1187 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 CALCRLQ16602 461 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 ATAT1Q5SQI0 421 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 MAEAQ7L5Y9 396 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 TAS1R1Q7RTX1 841 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 CABP7Q86V35 215 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 SLFN12Q8IYM2 578 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 SMG8Q8ND04 991 aaKnown RBP12.79□□□□□ -0.36
NEK3-204ENST00000552973 ASAP3Q8TDY4 903 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 TNFRSF25Q93038 417 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 RIPOR3Q96MK2 946 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 NECTIN4Q96NY8 510 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 KLHL5Q96PQ7 755 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 APOL6Q9BWW8 343 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 BRMS1Q9HCU9 246 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 MIOSQ9NXC5 875 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 LIMD1Q9UGP4 676 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 PCDHA12Q9UN75 941 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 HES2Q9Y543 173 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 PPME1Q9Y570 386 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 IPPQ9Y573 584 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 IRAK3Q9Y616 596 aa12.79□□□□□ -0.36
NEK3-204ENST00000552973 MYH9P35579 1960 aaKnown RBP12.79□□□□□ -0.36
NEK3-204ENST00000552973 INO80B-WBP1J3KQ70 363 aa12.78□□□□□ -0.36
NEK3-204ENST00000552973 TSPAN1O60635 241 aa12.78□□□□□ -0.36
NEK3-204ENST00000552973 BRD1O95696 1058 aa12.78□□□□□ -0.36
NEK3-204ENST00000552973 NEFLP07196 543 aa12.78□□□□□ -0.36
NEK3-204ENST00000552973 CNPP09543 421 aaKnown RBP12.78□□□□□ -0.36
NEK3-204ENST00000552973 NCLP19338 710 aaKnown RBP12.78□□□□□ -0.36
NEK3-204ENST00000552973 ATP2B1P20020 1258 aa12.78□□□□□ -0.36
NEK3-204ENST00000552973 AVPR2P30518 371 aa12.78□□□□□ -0.36
NEK3-204ENST00000552973 OR1G1P47890 313 aa12.78□□□□□ -0.36
NEK3-204ENST00000552973 PTENP60484 403 aa12.78□□□□□ -0.36
NEK3-204ENST00000552973 TCF15Q12870 199 aa12.78□□□□□ -0.36
NEK3-204ENST00000552973 CDR2LQ86X02 465 aaPredicted RBP12.78□□□□□ -0.36
NEK3-204ENST00000552973 NSUN7Q8NE18 718 aaKnown RBP12.78□□□□□ -0.36
NEK3-204ENST00000552973 PIGOQ8TEQ8 1089 aa12.78□□□□□ -0.36
NEK3-204ENST00000552973 RSPH1Q8WYR4 309 aa12.78□□□□□ -0.36
NEK3-204ENST00000552973 GAD1Q99259 594 aa12.78□□□□□ -0.36
NEK3-204ENST00000552973 TMEM175Q9BSA9 504 aa12.78□□□□□ -0.36
NEK3-204ENST00000552973 EMILIN2Q9BXX0 1053 aa12.78□□□□□ -0.36
NEK3-204ENST00000552973 TTC12Q9H892 705 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms