RNA–Protein interactions for RNA: ENST00000552890.5

TRAFD1-208, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 2

Gene TRAFD1, Length 1,043 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-208ENST00000552890 TMEM40Q8WWA1 233 aa11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 MRPS27Q92552 414 aaKnown RBP11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 PPP2R3CQ969Q6 453 aa11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 VWCEQ96DN2 955 aa11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 ZBTB10Q96DT7 871 aa11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 IPO9Q96P70 1041 aaKnown RBP11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 TGS1Q96RS0 853 aaKnown RBP11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 GAS2L1Q99501 681 aaPredicted RBP11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 PBX4Q9BYU1 374 aa11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 CDHR5Q9HBB8 845 aa11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 OLFML3Q9NRN5 406 aa11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 TOPORSQ9NS56 1045 aaPredicted RBP11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 FAM105AQ9NUU6 356 aa11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 LMCD1Q9NZU5 365 aa11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 ARHGAP28Q9P2N2 729 aa11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 ZDHHC9Q9Y397 364 aa11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 PCDHB12Q9Y5F1 795 aa11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 ARID2Q68CP9 1835 aa11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 SCN5AQ14524 2016 aa11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 RANBP2P49792 3224 aaKnown RBP11.3□□□□□ -0.6
TRAFD1-208ENST00000552890 MYH15Q9Y2K3 1946 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 PVALEFA0A1B0GWK0 134 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 KIAA0391O15091 583 aaKnown RBP11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 GTPBP6O43824 516 aaPredicted RBP11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 TRAK2O60296 914 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 UPP2O95045 317 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 FXR1P51114 621 aaKnown RBP eCLIP11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 SNRPFP62306 86 aaKnown RBP11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 POU5F1Q01860 360 aaKnown RBP11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 GIT2Q14161 759 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 MCM6Q14566 821 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 PTPROQ16827 1216 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 SLFN12LQ6IEE8 588 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 MRPL10Q7Z7H8 261 aaKnown RBP11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 ECHDC2Q86YB7 292 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 KSR1Q8IVT5 923 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 LRRC43Q8N309 656 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 PDILTQ8N807 584 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 SP7Q8TDD2 431 aaPredicted RBP11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 DDX12PQ92771 950 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 GBP4Q96PP9 640 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 PPP1R16BQ96T49 567 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 PLIN2Q99541 437 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 REEP2Q9BRK0 252 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 C11orf84Q9BUA3 381 aaPredicted RBP11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 RUSC1Q9BVN2 902 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 TMX1Q9H3N1 280 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 ZHX3Q9H4I2 956 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 ZNF576Q9H609 170 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 BLOC1S4Q9NUP1 217 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 KBTBD4Q9NVX7 518 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 CGNQ9P2M7 1197 aaKnown RBP11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 TNFSF13BQ9Y275 285 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 GIT1Q9Y2X7 761 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 MICAL3Q7RTP6 2002 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 ADGRA3Q8IWK6 1321 aa11.29□□□□□ -0.6
TRAFD1-208ENST00000552890 COL4A6Q14031 1691 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 FAM237AA0A1B0GTK4 181 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 TSPAN1O60635 241 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 TOM1L1O75674 476 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 ITGA4P13612 1032 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 IDEP14735 1019 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 LAG3P18627 525 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 YARSP54577 528 aaKnown RBP11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 DEFB103AP81534 67 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 GRIN1Q05586 938 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 PSMD2Q13200 908 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 DHX8Q14562 1220 aaKnown RBP11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 HERC4Q5GLZ8 1057 aaPredicted RBP11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 SPECC1Q5M775 1068 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 ATF7IP2Q5U623 682 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 PDE12Q6L8Q7 609 aaKnown RBP11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 SHC4Q6S5L8 630 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 KCNK18Q7Z418 384 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 HAUS6Q7Z4H7 955 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 CLP1Q92989 425 aaKnown RBP11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 P2RX5Q93086 422 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 BICD1Q96G01 975 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 FAM193BQ96PV7 902 aaPredicted RBP11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 C7orf25Q9BPX7 421 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 TCHPQ9BT92 498 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 LMAN2LQ9H0V9 348 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 TMEM206Q9H813 350 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 GPRC5CQ9NQ84 441 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 PUF60Q9UHX1 559 aaKnown RBP11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 PCDHB2Q9Y5E7 798 aa11.28□□□□□ -0.6
TRAFD1-208ENST00000552890 CLDN3O15551 220 aa11.27□□□□□ -0.61
TRAFD1-208ENST00000552890 SMC2O95347 1197 aa11.27□□□□□ -0.61
TRAFD1-208ENST00000552890 CA3P07451 260 aa11.27□□□□□ -0.61
TRAFD1-208ENST00000552890 MCF2P10911 925 aa11.27□□□□□ -0.61
TRAFD1-208ENST00000552890 ARF4P18085 180 aaPredicted RBP11.27□□□□□ -0.61
TRAFD1-208ENST00000552890 HOXA11P31270 313 aaPredicted RBP11.27□□□□□ -0.61
TRAFD1-208ENST00000552890 ALDH7A1P49419 539 aaKnown RBP11.27□□□□□ -0.61
TRAFD1-208ENST00000552890 NCKAP1LP55160 1127 aa11.27□□□□□ -0.61
TRAFD1-208ENST00000552890 ERVK-21P61565 698 aa11.27□□□□□ -0.61
TRAFD1-208ENST00000552890 KRT17Q04695 432 aa11.27□□□□□ -0.61
TRAFD1-208ENST00000552890 UBE3AQ05086 875 aa11.27□□□□□ -0.61
TRAFD1-208ENST00000552890 RNASELQ05823 741 aaKnown RBP11.27□□□□□ -0.61
TRAFD1-208ENST00000552890 ARSHQ5FYA8 562 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms