RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 KLHDC7AQ5VTJ3 777 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 ANKRD20A3Q5VUR7 823 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 CERS5Q8N5B7 392 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 KCTD6Q8NC69 237 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 BBOF1Q8ND07 529 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 GLIS3Q8NEA6 775 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 GDAP1Q8TB36 358 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 SCFD1Q8WVM8 642 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 FAM81BQ96LP2 452 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 MRC1P22897 1456 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 KIF1AQ12756 1690 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 A0A0U1RQJ8 604 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 SPDYE2BA6NHP3 402 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 SPDYE6P0CI01 402 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 APOBEC3FQ8IUX4 373 aaKnown RBP17.44■□□□□ 0.38
CUX1-213ENST00000549414 GPD1LQ8N335 351 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 DNAJC7Q99615 494 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 PI4K2AQ9BTU6 479 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 INTS13Q9NVM9 706 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 PCSK1NQ9UHG2 260 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 A6NJR5 290 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 PSMA2P25787 234 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 GNA15P30679 374 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 DDX42Q86XP3 938 aaKnown RBP eCLIP17.44■□□□□ 0.38
CUX1-213ENST00000549414 MAP7D3Q8IWC1 876 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 RNF149Q8NC42 400 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 HSPH1Q92598 858 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 DUSP9Q99956 384 aaKnown RBP17.44■□□□□ 0.38
CUX1-213ENST00000549414 PACSIN1Q9BY11 444 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 ELP3Q9H9T3 547 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 NFIBO00712 420 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 TACO1Q9BSH4 297 aaKnown RBP17.43■□□□□ 0.38
CUX1-213ENST00000549414 TAF1DQ9H5J8 278 aaPredicted RBP17.43■□□□□ 0.38
CUX1-213ENST00000549414 ARHGAP20Q9P2F6 1191 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 PABPN1LA6NDY0 278 aaKnown RBP17.43■□□□□ 0.38
CUX1-213ENST00000549414 SLC16A3O15427 465 aaKnown RBP17.43■□□□□ 0.38
CUX1-213ENST00000549414 CLTAP09496 248 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 CAP2P40123 477 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 GIT2Q14161 759 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 CATSPER4Q7RTX7 472 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 TRIM51Q9BSJ1 452 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 TTI1O43156 1089 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 SAT1P21673 171 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 LMNB2Q03252 620 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 TMEM35BQ8NCS4 154 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 SLIT3O75094 1523 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 I3L4J1 428 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 SREBF1P36956 1147 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 IL17AQ16552 155 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 PPP6R3Q5H9R7 873 aaPredicted RBP17.43■□□□□ 0.38
CUX1-213ENST00000549414 RILPQ96NA2 401 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 AGPAT3Q9NRZ7 376 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 BLOC1S4Q9NUP1 217 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 KLHL11Q9NVR0 708 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 FBXL5Q9UKA1 691 aa17.43■□□□□ 0.38
CUX1-213ENST00000549414 GOLGA8MH3BSY2 632 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 GGPS1O95749 300 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 PLS3P13797 630 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 HERVK_113P62684 666 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 NEDD9Q14511 834 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 TRIM65Q6PJ69 517 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 MCUR1Q96AQ8 359 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 FAM193BQ96PV7 902 aaPredicted RBP17.42■□□□□ 0.38
CUX1-213ENST00000549414 KIAA1586Q9HCI6 787 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 SSX2IPQ9Y2D8 614 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 TACC3Q9Y6A5 838 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 EXOC1LA0A1B0GW35 172 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 A0A1W2PQJ5 194 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 AKAP3O75969 853 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 COPB2P35606 906 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 CARSP49589 748 aaKnown RBP17.42■□□□□ 0.38
CUX1-213ENST00000549414 STAT5BP51692 787 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 MAGOHP61326 146 aaKnown RBP17.42■□□□□ 0.38
CUX1-213ENST00000549414 SLMAPQ14BN4 828 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 NAB2Q15742 525 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 GEN1Q17RS7 908 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 DARS2Q6PI48 645 aaKnown RBP17.42■□□□□ 0.38
CUX1-213ENST00000549414 CCNYQ8ND76 341 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 CPA5Q8WXQ8 436 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 THOC1Q96FV9 657 aaKnown RBP17.42■□□□□ 0.38
CUX1-213ENST00000549414 RIT2Q99578 217 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 WDR91A4D1P6 747 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 MCF2LO15068 1137 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 CCNI2Q6ZMN8 369 aaPredicted RBP17.42■□□□□ 0.38
CUX1-213ENST00000549414 SPATA33Q96N06 139 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 RPS6KC1Q96S38 1066 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 MIS12Q9H081 205 aa17.42■□□□□ 0.38
CUX1-213ENST00000549414 FAM86B1E9PN63 330 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 ZBTB39O15060 712 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 FAM86B2P0C5J1 330 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 CCDC137Q6PK04 289 aaKnown RBP17.41■□□□□ 0.38
CUX1-213ENST00000549414 SH3RF1Q7Z6J0 888 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 OR6B3Q8NGW1 331 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 PRKCEQ02156 737 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 CDR2LQ86X02 465 aaPredicted RBP17.41■□□□□ 0.38
CUX1-213ENST00000549414 TRIM59Q8IWR1 403 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 ANKS1AQ92625 1134 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 POLR3CQ9BUI4 534 aaPredicted RBP17.41■□□□□ 0.38
CUX1-213ENST00000549414 HMGB1P1B2RPK0 211 aaPredicted RBP17.41■□□□□ 0.38
CUX1-213ENST00000549414 PI4K2BG5E9Z4 385 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms