RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 MAMDC4Q6UXC1 1216 aa5.77□□□□□ -1.49
CLIP1-217ENST00000543205 SYT9Q86SS6 491 aa5.77□□□□□ -1.49
CLIP1-217ENST00000543205 REXO1Q8N1G1 1221 aaKnown RBP5.77□□□□□ -1.49
CLIP1-217ENST00000543205 SECISBP2LQ93073 1101 aaKnown RBP5.77□□□□□ -1.49
CLIP1-217ENST00000543205 FGD4Q96M96 766 aa5.77□□□□□ -1.49
CLIP1-217ENST00000543205 IWS1Q96ST2 819 aa5.77□□□□□ -1.49
CLIP1-217ENST00000543205 ASPSCR1Q9BZE9 553 aa5.77□□□□□ -1.49
CLIP1-217ENST00000543205 CCDC113Q9H0I3 377 aa5.77□□□□□ -1.49
CLIP1-217ENST00000543205 BRMS1Q9HCU9 246 aa5.77□□□□□ -1.49
CLIP1-217ENST00000543205 PXMP2Q9NR77 195 aa5.77□□□□□ -1.49
CLIP1-217ENST00000543205 TMEM63CQ9P1W3 806 aa5.77□□□□□ -1.49
CLIP1-217ENST00000543205 COL20A1Q9P218 1284 aa5.77□□□□□ -1.49
CLIP1-217ENST00000543205 ZHX1Q9UKY1 873 aaPredicted RBP5.77□□□□□ -1.49
CLIP1-217ENST00000543205 SMC3Q9UQE7 1217 aa5.77□□□□□ -1.49
CLIP1-217ENST00000543205 PLXNB2O15031 1838 aa5.77□□□□□ -1.49
CLIP1-217ENST00000543205 ZNF236Q9UL36 1845 aa5.77□□□□□ -1.49
CLIP1-217ENST00000543205 RPTORQ8N122 1335 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 SNAI1O95863 264 aaPredicted RBP5.76□□□□□ -1.49
CLIP1-217ENST00000543205 HSP90AA1P07900 732 aaKnown RBP5.76□□□□□ -1.49
CLIP1-217ENST00000543205 MYCLP12524 364 aaPredicted RBP5.76□□□□□ -1.49
CLIP1-217ENST00000543205 CCND2P30279 289 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 PCBP4P57723 403 aaKnown RBP5.76□□□□□ -1.49
CLIP1-217ENST00000543205 KRT76Q01546 638 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 AP3B2Q13367 1082 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 ACVR2BQ13705 512 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 SEPT6Q14141 434 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 PGM5Q15124 567 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 STXBP2Q15833 593 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 C2orf27AQ580R0 203 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 PRAMEF19Q5SWL8 479 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 ZNF468Q5VIY5 522 aaPredicted RBP5.76□□□□□ -1.49
CLIP1-217ENST00000543205 JAKMIP3Q5VZ66 844 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 CCDC81Q6ZN84 652 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 EEPD1Q7L9B9 569 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 BLIDQ8IZY5 108 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 CXorf38Q8TB03 319 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 ZNF333Q96JL9 665 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 C8orf76Q96K31 380 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 ZNF700Q9H0M5 742 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 RNF208Q9H0X6 261 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 RBSNQ9H1K0 784 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 ABHD16BQ9H3Z7 469 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 ABI2Q9NYB9 513 aaPredicted RBP5.76□□□□□ -1.49
CLIP1-217ENST00000543205 ZFATQ9P243 1243 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 PCDHA6Q9UN73 950 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 PCDHA4Q9UN74 947 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 KCNJ14Q9UNX9 436 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 PCDHA8Q9Y5H6 950 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 ASTN1O14525 1302 aa5.76□□□□□ -1.49
CLIP1-217ENST00000543205 MYH6P13533 1939 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 DYTNA2CJ06 578 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 PDPK1O15530 556 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 COL6A1P12109 1028 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 MYCLP1P12525 358 aaPredicted RBP5.75□□□□□ -1.49
CLIP1-217ENST00000543205 CYBAP13498 195 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 CCL5P13501 91 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 GJB2P29033 226 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 CCND3P30281 292 aaPredicted RBP5.75□□□□□ -1.49
CLIP1-217ENST00000543205 KRT2P35908 639 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 POU5F1Q01860 360 aaKnown RBP5.75□□□□□ -1.49
CLIP1-217ENST00000543205 IFRD2Q12894 506 aaPredicted RBP5.75□□□□□ -1.49
CLIP1-217ENST00000543205 CUL4AQ13619 759 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 SAFBQ15424 915 aaKnown RBP eCLIP5.75□□□□□ -1.49
CLIP1-217ENST00000543205 MAP3K21Q5TCX8 1036 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 KRT40Q6A162 431 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 XKR5Q6UX68 686 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 FBXO16Q8IX29 292 aaPredicted RBP5.75□□□□□ -1.49
CLIP1-217ENST00000543205 DAGLBQ8NCG7 672 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 EPS8L3Q8TE67 593 aaKnown RBP5.75□□□□□ -1.49
CLIP1-217ENST00000543205 SNX29Q8TEQ0 813 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 PDCD2LQ9BRP1 358 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 PHF20Q9BVI0 1012 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 ANO3Q9BYT9 981 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 IGFLR1Q9H665 355 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 VTA1Q9NP79 307 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 FOXD3Q9UJU5 478 aaPredicted RBP5.75□□□□□ -1.49
CLIP1-217ENST00000543205 FAM184BQ9ULE4 1060 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 DAAM1Q9Y4D1 1078 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 DDX49Q9Y6V7 483 aaKnown RBP5.75□□□□□ -1.49
CLIP1-217ENST00000543205 SMCHD1A6NHR9 2005 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 DOCK3Q8IZD9 2030 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 SEPT4O43236 478 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 TIMM44O43615 452 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 MSCO60682 206 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 MMP20O60882 483 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 PHACTR2O75167 634 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 TNFRSF21O75509 655 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 STAM2O75886 525 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 MMP1P03956 469 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 PSAPP07602 524 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 USP17L7P0C7H9 530 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 ZNF865P0CJ78 1059 aaPredicted RBP5.75□□□□□ -1.49
CLIP1-217ENST00000543205 ARAFP10398 606 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 AKR1A1P14550 325 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 EDNRBP24530 442 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 ADH6P28332 368 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 ST13P50502 369 aaKnown RBP5.75□□□□□ -1.49
CLIP1-217ENST00000543205 NFKB2Q00653 900 aa5.75□□□□□ -1.49
CLIP1-217ENST00000543205 SRSF11Q05519 484 aaKnown RBP5.75□□□□□ -1.49
CLIP1-217ENST00000543205 BECN1Q14457 450 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms