RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-209ENST00000542717 MCRS1Q96EZ8 462 aa3.8□□□□□ -1.8
CHD4-209ENST00000542717 MED8Q96G25 268 aa3.8□□□□□ -1.8
CHD4-209ENST00000542717 ZNF512BQ96KM6 892 aaPredicted RBP3.8□□□□□ -1.8
CHD4-209ENST00000542717 CAMK1GQ96NX5 476 aa3.8□□□□□ -1.8
CHD4-209ENST00000542717 PPP1R16BQ96T49 567 aa3.8□□□□□ -1.8
CHD4-209ENST00000542717 PLA2G2FQ9BZM2 168 aa3.8□□□□□ -1.8
CHD4-209ENST00000542717 PLEKHA4Q9H4M7 779 aa3.8□□□□□ -1.8
CHD4-209ENST00000542717 ARPP21Q9UBL0 812 aaPredicted RBP3.8□□□□□ -1.8
CHD4-209ENST00000542717 INVSQ9Y283 1065 aa3.8□□□□□ -1.8
CHD4-209ENST00000542717 INPP5FQ9Y2H2 1132 aa3.8□□□□□ -1.8
CHD4-209ENST00000542717 NOC2LQ9Y3T9 749 aaKnown RBP3.8□□□□□ -1.8
CHD4-209ENST00000542717 LAMA1P25391 3075 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 COL5A1P20908 1838 aaPredicted RBP3.79□□□□□ -1.8
CHD4-209ENST00000542717 CACNA1DQ01668 2161 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 IGKV6D-41A0A0C4DH26 115 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 FAM149AA5PLN7 773 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 RRN3P2A6NIE6 340 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 GOLGA8CPA6NN73 597 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 UPK3BL1B0FP48 263 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 UPK3BL2E5RIL1 263 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 ZNF263O14978 683 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 CCL16O15467 120 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 TEX28O15482 410 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 SH3BP5O60239 455 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 ATG13O75143 517 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 ZMYND10O75800 440 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 TGFB3P10600 412 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 HSPD1P10809 573 aaKnown RBP3.79□□□□□ -1.8
CHD4-209ENST00000542717 HLA-EP13747 358 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 FAM189BP81408 668 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 TFAP4Q01664 338 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 GFPT1Q06210 699 aaPredicted RBP3.79□□□□□ -1.8
CHD4-209ENST00000542717 NEDD9Q14511 834 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 CCDC157Q569K6 752 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 C2orf27AQ580R0 203 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 CLLU1OSQ5K130 101 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 PPP4R3BQ5MIZ7 849 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 PPM1LQ5SGD2 360 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 LIN9Q5TKA1 542 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 TANGO2Q6ICL3 276 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 PDXDC1Q6P996 788 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 C1orf228Q6PIY5 440 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 AGMOQ6ZNB7 445 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 FAM43BQ6ZT52 329 aaPredicted RBP3.79□□□□□ -1.8
CHD4-209ENST00000542717 TOGARAM2Q6ZUX3 1019 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 TMPRSS7Q7RTY8 843 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 VSIG10LQ86VR7 867 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 ECHDC2Q86YB7 292 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 MCF2L2Q86YR7 1114 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 GALNT15Q8N3T1 639 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 ITFG1Q8TB96 612 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 HDAC7Q8WUI4 952 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 NANOS1Q8WY41 292 aaKnown RBP3.79□□□□□ -1.8
CHD4-209ENST00000542717 TSC1Q92574 1164 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 WBP1Q96G27 269 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 FAM193BQ96PV7 902 aaPredicted RBP3.79□□□□□ -1.8
CHD4-209ENST00000542717 RPS6KC1Q96S38 1066 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 CDHR5Q9HBB8 845 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 ZNF334Q9HCZ1 680 aaPredicted RBP3.79□□□□□ -1.8
CHD4-209ENST00000542717 PXMP2Q9NR77 195 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 RNF19AQ9NV58 838 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 HSPBP1Q9NZL4 362 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 COL20A1Q9P218 1284 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 STK39Q9UEW8 545 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 EVLQ9UI08 416 aaPredicted RBP3.79□□□□□ -1.8
CHD4-209ENST00000542717 MBD1Q9UIS9 605 aaPredicted RBP3.79□□□□□ -1.8
CHD4-209ENST00000542717 CIZ1Q9ULV3 898 aaPredicted RBP3.79□□□□□ -1.8
CHD4-209ENST00000542717 MRPS23Q9Y3D9 190 aaKnown RBP3.79□□□□□ -1.8
CHD4-209ENST00000542717 SALL2Q9Y467 1007 aaPredicted RBP3.79□□□□□ -1.8
CHD4-209ENST00000542717 PCDHA1Q9Y5I3 950 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 AK5Q9Y6K8 562 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 FBN2P35556 2912 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 TSC2P49815 1807 aa3.79□□□□□ -1.8
CHD4-209ENST00000542717 NUP205Q92621 2012 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 ABCB11O95342 1321 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 BLACEA4D250 179 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 MBLAC1A4D2B0 266 aaPredicted RBP3.78□□□□□ -1.8
CHD4-209ENST00000542717 SLC38A8A6NNN8 435 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 TGM5O43548 720 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 B4GALT3O60512 393 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 XYLBO75191 536 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 GALTP07902 379 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 INSRRP14616 1297 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 RPL17P18621 184 aaKnown RBP3.78□□□□□ -1.8
CHD4-209ENST00000542717 SLC11A1P49279 550 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 GLUD2P49448 558 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 DGKEP52429 567 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 CCDC173Q0VFZ6 552 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 SEMA3FQ13275 785 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 GNPTABQ3T906 1256 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 LONRF3Q496Y0 759 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 PABPC1LQ4VXU2 614 aaKnown RBP3.78□□□□□ -1.8
CHD4-209ENST00000542717 USP39Q53GS9 565 aaKnown RBP3.78□□□□□ -1.8
CHD4-209ENST00000542717 RRP12Q5JTH9 1297 aaKnown RBP3.78□□□□□ -1.8
CHD4-209ENST00000542717 MARCH8Q5T0T0 291 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 ARHGAP40Q5TG30 622 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 PMS2CLQ68D20 193 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 POTEHQ6S545 545 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 METTL7BQ6UX53 244 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 ARMCX6Q7L4S7 300 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms