RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 PASD1Q8IV76 773 aa18.3■□□□□ 0.52
USP28-208ENST00000540438 TAS1R2Q8TE23 839 aa18.3■□□□□ 0.52
USP28-208ENST00000540438 FAM213AQ9BRX8 229 aa18.3■□□□□ 0.52
USP28-208ENST00000540438 SEPT9Q9UHD8 586 aaPredicted RBP18.3■□□□□ 0.52
USP28-208ENST00000540438 SLC16A3O15427 465 aaKnown RBP18.3■□□□□ 0.52
USP28-208ENST00000540438 SEC24CP53992 1094 aa18.3■□□□□ 0.52
USP28-208ENST00000540438 TUBB4BP68371 445 aa18.3■□□□□ 0.52
USP28-208ENST00000540438 ANGEL2Q5VTE6 544 aaKnown RBP18.3■□□□□ 0.52
USP28-208ENST00000540438 POMGNT1Q8WZA1 660 aa18.3■□□□□ 0.52
USP28-208ENST00000540438 ZBTB45Q96K62 511 aaPredicted RBP18.3■□□□□ 0.52
USP28-208ENST00000540438 TAOK3Q9H2K8 898 aa18.3■□□□□ 0.52
USP28-208ENST00000540438 AMFRQ9UKV5 643 aa18.3■□□□□ 0.52
USP28-208ENST00000540438 ADGRA3Q8IWK6 1321 aa18.3■□□□□ 0.52
USP28-208ENST00000540438 DCDC2CA8MYV0 355 aa18.29■□□□□ 0.52
USP28-208ENST00000540438 PGRMC1O00264 195 aaKnown RBP18.29■□□□□ 0.52
USP28-208ENST00000540438 GJB6O95452 261 aa18.29■□□□□ 0.52
USP28-208ENST00000540438 HSD17B4P51659 736 aa18.29■□□□□ 0.52
USP28-208ENST00000540438 ZNF131P52739 623 aa18.29■□□□□ 0.52
USP28-208ENST00000540438 WNT7BP56706 349 aa18.29■□□□□ 0.52
USP28-208ENST00000540438 NOP9Q86U38 636 aaKnown RBP18.29■□□□□ 0.52
USP28-208ENST00000540438 LMO3Q8TAP4 145 aa18.29■□□□□ 0.52
USP28-208ENST00000540438 SLC38A10Q9HBR0 1119 aa18.29■□□□□ 0.52
USP28-208ENST00000540438 EIF3DO15371 548 aaKnown RBP eCLIP18.29■□□□□ 0.52
USP28-208ENST00000540438 NPTX2P47972 431 aa18.29■□□□□ 0.52
USP28-208ENST00000540438 MXI1P50539 228 aa18.29■□□□□ 0.52
USP28-208ENST00000540438 CNTN2Q02246 1040 aa18.29■□□□□ 0.52
USP28-208ENST00000540438 CDR2LQ86X02 465 aaPredicted RBP18.29■□□□□ 0.52
USP28-208ENST00000540438 XXYLT1Q8NBI6 393 aa18.29■□□□□ 0.52
USP28-208ENST00000540438 PIK3R5Q8WYR1 880 aa18.29■□□□□ 0.52
USP28-208ENST00000540438 KREMEN1Q96MU8 473 aa18.29■□□□□ 0.52
USP28-208ENST00000540438 DMAC2Q9NW81 257 aa18.29■□□□□ 0.52
USP28-208ENST00000540438 PGAP2Q9UHJ9 254 aa18.29■□□□□ 0.52
USP28-208ENST00000540438 SNX24Q9Y343 169 aa18.29■□□□□ 0.52
USP28-208ENST00000540438 CNGA1P29973 690 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 AARSP49588 968 aaKnown RBP eCLIP18.28■□□□□ 0.52
USP28-208ENST00000540438 SNX1Q13596 522 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 SEPT14Q6ZU15 432 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 C18orf8Q96DM3 657 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 AGPAT1Q99943 283 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 PIM2Q9P1W9 311 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 ATP8A1Q9Y2Q0 1164 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 TLDC2A0PJX2 215 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 NFKBIEO00221 500 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 HNRNPDLO14979 420 aaKnown RBP18.28■□□□□ 0.52
USP28-208ENST00000540438 NR3C2P08235 984 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 PLS3P13797 630 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 TNNC1P63316 161 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 IRX5P78411 483 aaPredicted RBP18.28■□□□□ 0.52
USP28-208ENST00000540438 SNRNP35Q16560 246 aaKnown RBP18.28■□□□□ 0.52
USP28-208ENST00000540438 FAM212AQ96EL1 285 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 ALG6Q9Y672 507 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 VWA5AO00534 786 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 TUBBP07437 444 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 VPS41P49754 854 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 IRAK1P51617 712 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 SETQ01105 290 aaPredicted RBP18.28■□□□□ 0.52
USP28-208ENST00000540438 TRIP13Q15645 432 aaPredicted RBP18.28■□□□□ 0.52
USP28-208ENST00000540438 ZBTB41Q5SVQ8 909 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 B3GNT9Q6UX72 402 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 GOLGA5Q8TBA6 731 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 BCAS4Q8TDM0 211 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 RNPC3Q96LT9 517 aaKnown RBP18.28■□□□□ 0.52
USP28-208ENST00000540438 PXMP2Q9NR77 195 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 FBXL5Q9UKA1 691 aa18.28■□□□□ 0.52
USP28-208ENST00000540438 PRKCIP41743 596 aa18.27■□□□□ 0.52
USP28-208ENST00000540438 PAK2Q13177 524 aa18.27■□□□□ 0.52
USP28-208ENST00000540438 NLRX1Q86UT6 975 aa18.27■□□□□ 0.52
USP28-208ENST00000540438 ACCSQ96QU6 501 aa18.27■□□□□ 0.52
USP28-208ENST00000540438 RIT2Q99578 217 aa18.27■□□□□ 0.52
USP28-208ENST00000540438 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.27■□□□□ 0.527e-6■■■■□ 21.1
USP28-208ENST00000540438 KMT5AQ9NQR1 393 aa18.27■□□□□ 0.52
USP28-208ENST00000540438 GDF3Q9NR23 364 aa18.27■□□□□ 0.52
USP28-208ENST00000540438 CFHP08603 1231 aa18.27■□□□□ 0.51
USP28-208ENST00000540438 TMOD1P28289 359 aa18.27■□□□□ 0.51
USP28-208ENST00000540438 CDR1P51861 262 aa18.27■□□□□ 0.51
USP28-208ENST00000540438 STXBP4Q6ZWJ1 553 aa18.27■□□□□ 0.51
USP28-208ENST00000540438 CCDC60Q8IWA6 550 aaPredicted RBP18.27■□□□□ 0.51
USP28-208ENST00000540438 PPP1R16BQ96T49 567 aa18.27■□□□□ 0.51
USP28-208ENST00000540438 ANKFY1Q9P2R3 1169 aa18.27■□□□□ 0.51
USP28-208ENST00000540438 UBIAD1Q9Y5Z9 338 aa18.27■□□□□ 0.51
USP28-208ENST00000540438 BZW2Q9Y6E2 419 aaKnown RBP18.27■□□□□ 0.51
USP28-208ENST00000540438 FOXO6A8MYZ6 492 aa18.26■□□□□ 0.51
USP28-208ENST00000540438 PPP1R37O75864 691 aa18.26■□□□□ 0.51
USP28-208ENST00000540438 RGS20O76081 388 aa18.26■□□□□ 0.51
USP28-208ENST00000540438 GUCY2CP25092 1073 aa18.26■□□□□ 0.51
USP28-208ENST00000540438 PLTPP55058 493 aa18.26■□□□□ 0.51
USP28-208ENST00000540438 CPA5Q8WXQ8 436 aa18.26■□□□□ 0.51
USP28-208ENST00000540438 PSMD1Q99460 953 aa18.26■□□□□ 0.51
USP28-208ENST00000540438 CAPS2Q9BXY5 557 aa18.26■□□□□ 0.51
USP28-208ENST00000540438 VIPAS39Q9H9C1 493 aa18.26■□□□□ 0.51
USP28-208ENST00000540438 ODF2LQ9ULJ1 636 aa18.26■□□□□ 0.51
USP28-208ENST00000540438 SP2Q02086 613 aa18.26■□□□□ 0.51
USP28-208ENST00000540438 MCTP2Q6DN12 878 aa18.26■□□□□ 0.51
USP28-208ENST00000540438 CCDC25Q86WR0 208 aa18.26■□□□□ 0.51
USP28-208ENST00000540438 ZDHHC14Q8IZN3 488 aa18.26■□□□□ 0.51
USP28-208ENST00000540438 BBXQ8WY36 941 aaPredicted RBP18.26■□□□□ 0.51
USP28-208ENST00000540438 RRP15Q9Y3B9 282 aaKnown RBP18.26■□□□□ 0.51
USP28-208ENST00000540438 PFASO15067 1338 aa18.26■□□□□ 0.51
USP28-208ENST00000540438 ZBED4O75132 1171 aa18.25■□□□□ 0.51
USP28-208ENST00000540438 MARK3P27448 753 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms