RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 ZNF213O14771 459 aa10.42□□□□□ -0.74
USP28-205ENST00000537706 NR1I2O75469 434 aa10.42□□□□□ -0.74
USP28-205ENST00000537706 PAPSS2O95340 614 aaPredicted RBP10.42□□□□□ -0.74
USP28-205ENST00000537706 HNRNPA1P09651 372 aaKnown RBP eCLIP10.42□□□□□ -0.74
USP28-205ENST00000537706 SPATA31D3P0C874 917 aa10.42□□□□□ -0.74
USP28-205ENST00000537706 FZD5Q13467 585 aa10.42□□□□□ -0.74
USP28-205ENST00000537706 CCDC6Q16204 474 aa10.42□□□□□ -0.74
USP28-205ENST00000537706 TWF2Q6IBS0 349 aaKnown RBP10.42□□□□□ -0.74
USP28-205ENST00000537706 PDXDC2PQ6P474 469 aa10.42□□□□□ -0.74
USP28-205ENST00000537706 SPATA31D4Q6ZUB0 917 aa10.42□□□□□ -0.74
USP28-205ENST00000537706 ADAM32Q8TC27 787 aa10.42□□□□□ -0.74
USP28-205ENST00000537706 MKNK1Q9BUB5 465 aa10.42□□□□□ -0.74
USP28-205ENST00000537706 GPSM3Q9Y4H4 160 aa10.42□□□□□ -0.74
USP28-205ENST00000537706 UBIAD1Q9Y5Z9 338 aa10.42□□□□□ -0.74
USP28-205ENST00000537706 TGM5O43548 720 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 MPLP40238 635 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 PHKA2P46019 1235 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 PPM1LQ5SGD2 360 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 C1orf228Q6PIY5 440 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 ENAHQ8N8S7 591 aaPredicted RBP10.41□□□□□ -0.74
USP28-205ENST00000537706 SLC32A1Q9H598 525 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 RIOX1Q9H6W3 641 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 BRD9Q9H8M2 597 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 ZNF302Q9NR11 478 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 DNAJB4Q9UDY4 337 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 C2orf16Q68DN1 1984 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 NEDD4P46934 1319 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 PIK3CDO00329 1044 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 GIPC1O14908 333 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 C22orf31O95567 290 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 CCDC192P0DO97 292 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 ITGB5P18084 799 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 MFAP1P55081 439 aaKnown RBP10.41□□□□□ -0.74
USP28-205ENST00000537706 COL28A1Q2UY09 1125 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 MIS18BP1Q6P0N0 1132 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 PROSER1Q86XN7 944 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 TBC1D10CQ8IV04 446 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 PANK1Q8TE04 598 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 MAD2L2Q9UI95 211 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 KCNH3Q9ULD8 1083 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 POLIQ9UNA4 740 aa10.41□□□□□ -0.74
USP28-205ENST00000537706 SPDYE3A6NKU9 549 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 C4orf47A7E2U8 309 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 NRP1O14786 923 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 OFD1O75665 1012 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 DARSP14868 501 aaKnown RBP10.4□□□□□ -0.74
USP28-205ENST00000537706 SFPQP23246 707 aaKnown RBP eCLIP10.4□□□□□ -0.74
USP28-205ENST00000537706 KIF5BP33176 963 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 CDC42EP1Q00587 391 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 DSG1Q02413 1049 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 TROAPQ12815 778 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 MCMDC2Q4G0Z9 681 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 KIAA1211LQ6NV74 962 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 USP17L6PQ6QN14 398 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 GPR65Q8IYL9 337 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 GAB3Q8WWW8 586 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 NLRP7Q8WX94 980 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 IRF7Q92985 503 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 LPPQ93052 612 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 MSANTD3Q96H12 275 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 TRAIPQ9BWF2 469 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 GCOM2Q9BZD3 368 aaPredicted RBP10.4□□□□□ -0.74
USP28-205ENST00000537706 FNIP2Q9P278 1114 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 TCEAL9Q9UHQ7 104 aa10.4□□□□□ -0.74
USP28-205ENST00000537706 PALM3A6NDB9 673 aaPredicted RBP10.39□□□□□ -0.75
USP28-205ENST00000537706 RPP40O75818 363 aaKnown RBP10.39□□□□□ -0.75
USP28-205ENST00000537706 HOXA6P31267 233 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 CLCN3P51790 818 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 PLA2G2CQ5R387 149 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 KRT23Q9C075 422 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 INO80BQ9C086 356 aaPredicted RBP10.39□□□□□ -0.75
USP28-205ENST00000537706 SEC63Q9UGP8 760 aaKnown RBP10.39□□□□□ -0.75
USP28-205ENST00000537706 CNTNAP2Q9UHC6 1331 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 H0Y626 953 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 AKAP3O75969 853 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 ATG7O95352 703 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 TRIM16O95361 564 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 TOP3BO95985 862 aaKnown RBP10.39□□□□□ -0.75
USP28-205ENST00000537706 RAP1GAPP47736 663 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 OR1G1P47890 313 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 LONRF3Q496Y0 759 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 EFCAB12Q6NXP0 572 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 ZNF280BQ86YH2 543 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 FAM200AQ8TCP9 573 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 ELSPBP1Q96BH3 223 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 TRMT61BQ9BVS5 477 aaKnown RBP10.39□□□□□ -0.75
USP28-205ENST00000537706 COLEC11Q9BWP8 271 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 FAM105AQ9NUU6 356 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 CACNA2D2Q9NY47 1150 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 GDE1Q9NZC3 331 aa10.39□□□□□ -0.75
USP28-205ENST00000537706 PRG3Q9Y2Y8 225 aaPredicted RBP10.39□□□□□ -0.75
USP28-205ENST00000537706 MYH6P13533 1939 aa10.38□□□□□ -0.75
USP28-205ENST00000537706 DOCK5Q9H7D0 1870 aa10.38□□□□□ -0.75
USP28-205ENST00000537706 B4E1Z4 1266 aa10.38□□□□□ -0.75
USP28-205ENST00000537706 HYAL3O43820 417 aaPredicted RBP10.38□□□□□ -0.75
USP28-205ENST00000537706 NEFLP07196 543 aa10.38□□□□□ -0.75
USP28-205ENST00000537706 HOXA9P31269 272 aa10.38□□□□□ -0.75
USP28-205ENST00000537706 NTHL1P78549 312 aa10.38□□□□□ -0.75
USP28-205ENST00000537706 PTGDRQ13258 359 aa10.38□□□□□ -0.75
USP28-205ENST00000537706 ELF2Q15723 593 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms