RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 P2RX5Q93086 422 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 HPS3Q969F9 1004 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 SLC9A7Q96T83 725 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 TMX1Q9H3N1 280 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 PRDM12Q9H4Q4 367 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 AGO3Q9H9G7 860 aaKnown RBP13.14□□□□□ -0.31
CLIP1-208ENST00000537004 SLC28A3Q9HAS3 691 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 CDHR5Q9HBB8 845 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 SLC39A2Q9NP94 309 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 VAV3Q9UKW4 847 aa13.14□□□□□ -0.31
CLIP1-208ENST00000537004 ABHD14A-ACY1A0A1B0GW23 586 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 BICDL2A1A5D9 508 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 E9PMD0 336 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 N4BP3O15049 544 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 MED24O75448 989 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 IDEP14735 1019 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 CCNE1P24864 410 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 COPB1P53618 953 aaKnown RBP13.13□□□□□ -0.31
CLIP1-208ENST00000537004 MRPS6P82932 125 aaKnown RBP13.13□□□□□ -0.31
CLIP1-208ENST00000537004 MKRN4PQ13434 485 aaPredicted RBP13.13□□□□□ -0.31
CLIP1-208ENST00000537004 RAB30Q15771 203 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 NCAPH2Q6IBW4 605 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 RSPH3Q86UC2 560 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 KIAA0319LQ8IZA0 1049 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 MYOCDQ8IZQ8 938 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 METTL13Q8N6R0 699 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 BANK1Q8NDB2 785 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 ERMNQ8TAM6 284 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 BBXQ8WY36 941 aaPredicted RBP13.13□□□□□ -0.31
CLIP1-208ENST00000537004 THAP9Q9H5L6 903 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 TAB2Q9NYJ8 693 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 STXBP5LQ9Y2K9 1186 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 KAT6AQ92794 2004 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.13□□□□□ -0.31
CLIP1-208ENST00000537004 C22orf31O95567 290 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 SFNP31947 248 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 CLCN3P51790 818 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 JAK3P52333 1124 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 FBXO47Q5MNV8 452 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 E4F1Q66K89 784 aaPredicted RBP13.13□□□□□ -0.31
CLIP1-208ENST00000537004 PPP2R2DQ66LE6 453 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 CREBRFQ8IUR6 639 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 TC2NQ8N9U0 490 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 PHOSPHO2Q8TCD6 241 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 NOC3LQ8WTT2 800 aaKnown RBP13.13□□□□□ -0.31
CLIP1-208ENST00000537004 DNAJC19Q96DA6 116 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 DUSP9Q99956 384 aaKnown RBP13.13□□□□□ -0.31
CLIP1-208ENST00000537004 SRRTQ9BXP5 876 aaKnown RBP13.13□□□□□ -0.31
CLIP1-208ENST00000537004 VPS16Q9H269 839 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 PCDHA11Q9Y5I1 949 aa13.13□□□□□ -0.31
CLIP1-208ENST00000537004 SMIM35A0A1B0GVV1 85 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 TLL1O43897 1013 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 VTNP04004 478 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 OATP04181 439 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 SSBP05455 408 aaKnown RBP eCLIP13.12□□□□□ -0.31
CLIP1-208ENST00000537004 PLA2G4BP0C869 781 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 EEF1GP26641 437 aaKnown RBP13.12□□□□□ -0.31
CLIP1-208ENST00000537004 CD52P31358 61 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 ADKP55263 362 aaKnown RBP13.12□□□□□ -0.31
CLIP1-208ENST00000537004 EHHADHQ08426 723 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 ZNF484Q5JVG2 852 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 ANKRD40Q6AI12 368 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 POTEGQ6S5H5 508 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 CATSPER3Q86XQ3 398 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 TMEM139Q8IV31 216 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 LRRC71Q8N4P6 559 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 CSGALNACT2Q8N6G5 542 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 SEPT8Q92599 483 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 ZNF668Q96K58 619 aaPredicted RBP13.12□□□□□ -0.31
CLIP1-208ENST00000537004 ZBED2Q9BTP6 218 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 TRMT1Q9NXH9 659 aaKnown RBP13.12□□□□□ -0.31
CLIP1-208ENST00000537004 WRAP73Q9P2S5 460 aaPredicted RBP13.12□□□□□ -0.31
CLIP1-208ENST00000537004 STK24Q9Y6E0 443 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 ITIH6Q6UXX5 1313 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 TMEM265A0A087WTH1 108 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 RFXAPO00287 272 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 UPP2O95045 317 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 STBD1O95210 358 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 GJB5O95377 273 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 RPA1P27694 616 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 PSMD2Q13200 908 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 IER5Q5VY09 327 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 TMEM40Q8WWA1 233 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 PRIMPOLQ96LW4 560 aa13.12□□□□□ -0.31
CLIP1-208ENST00000537004 BMP2KQ9NSY1 1161 aaPredicted RBP13.12□□□□□ -0.31
CLIP1-208ENST00000537004 SPATA31C1P0DKV0 1188 aa13.11□□□□□ -0.31
CLIP1-208ENST00000537004 TNNT1P13805 278 aa13.11□□□□□ -0.31
CLIP1-208ENST00000537004 FOSL2P15408 326 aa13.11□□□□□ -0.31
CLIP1-208ENST00000537004 COASYQ13057 564 aa13.11□□□□□ -0.31
CLIP1-208ENST00000537004 PPP2R5CQ13362 524 aa13.11□□□□□ -0.31
CLIP1-208ENST00000537004 DRP2Q13474 957 aa13.11□□□□□ -0.31
CLIP1-208ENST00000537004 ADGRE1Q14246 886 aa13.11□□□□□ -0.31
CLIP1-208ENST00000537004 KIZQ2M2Z5 673 aa13.11□□□□□ -0.31
CLIP1-208ENST00000537004 PLA2G4FQ68DD2 849 aa13.11□□□□□ -0.31
CLIP1-208ENST00000537004 NYAP1Q6ZVC0 841 aa13.11□□□□□ -0.31
CLIP1-208ENST00000537004 PPFIBP1Q86W92 1011 aa13.11□□□□□ -0.31
CLIP1-208ENST00000537004 GPBP1Q86WP2 473 aa13.11□□□□□ -0.31
CLIP1-208ENST00000537004 GUF1Q8N442 669 aaKnown RBP13.11□□□□□ -0.31
CLIP1-208ENST00000537004 BAG1Q99933 345 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-208ENST00000537004 CELF4Q9BZC1 486 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms