RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 TBC1D13Q9NVG8 400 aa14.62□□□□□ -0.07
RTN3-207ENST00000536011 DZANK1Q9NVP4 752 aa14.62□□□□□ -0.07
RTN3-207ENST00000536011 ARID2Q68CP9 1835 aa14.62□□□□□ -0.07
RTN3-207ENST00000536011 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.61□□□□□ -0.07
RTN3-207ENST00000536011 FAM205CA6NFA0 338 aa14.61□□□□□ -0.07
RTN3-207ENST00000536011 C2orf71A6NGG8 1288 aa14.61□□□□□ -0.07
RTN3-207ENST00000536011 BTBD18B2RXH4 712 aa14.61□□□□□ -0.07
RTN3-207ENST00000536011 SLITRK3O94933 977 aa14.61□□□□□ -0.07
RTN3-207ENST00000536011 POU5F1BQ06416 359 aa14.61□□□□□ -0.07
RTN3-207ENST00000536011 KCNC3Q14003 757 aa14.61□□□□□ -0.07
RTN3-207ENST00000536011 NOTUMQ6P988 496 aa14.61□□□□□ -0.07
RTN3-207ENST00000536011 MRPL10Q7Z7H8 261 aaKnown RBP14.61□□□□□ -0.07
RTN3-207ENST00000536011 DDX53Q86TM3 631 aaKnown RBP14.61□□□□□ -0.07
RTN3-207ENST00000536011 HACE1Q8IYU2 909 aa14.61□□□□□ -0.07
RTN3-207ENST00000536011 VPS52Q8N1B4 723 aa14.61□□□□□ -0.07
RTN3-207ENST00000536011 IGSF21Q96ID5 467 aa14.61□□□□□ -0.07
RTN3-207ENST00000536011 MFSD14AQ96MC6 490 aa14.61□□□□□ -0.07
RTN3-207ENST00000536011 NECTIN4Q96NY8 510 aa14.61□□□□□ -0.07
RTN3-207ENST00000536011 FAM193BQ96PV7 902 aaPredicted RBP14.61□□□□□ -0.07
RTN3-207ENST00000536011 HSD17B14Q9BPX1 270 aa14.61□□□□□ -0.07
RTN3-207ENST00000536011 KCNH6Q9H252 994 aa14.61□□□□□ -0.07
RTN3-207ENST00000536011 RSAD1Q9HA92 442 aa14.61□□□□□ -0.07
RTN3-207ENST00000536011 LIMCH1Q9UPQ0 1083 aa14.61□□□□□ -0.07
RTN3-207ENST00000536011 NT5C1B-RDH14C9J2C7 533 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 JAK2O60674 1132 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 OFD1O75665 1012 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 CXCL14O95715 111 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 TXKP42681 527 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 RBM10P98175 930 aaKnown RBP14.6□□□□□ -0.07
RTN3-207ENST00000536011 ITIH3Q06033 890 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 ORC2Q13416 577 aaPredicted RBP14.6□□□□□ -0.07
RTN3-207ENST00000536011 LONRF3Q496Y0 759 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 PPFIBP1Q86W92 1011 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 EDAQ92838 391 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 RPGRIP1Q96KN7 1286 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 LLPHQ9BRT6 129 aaKnown RBP14.6□□□□□ -0.07
RTN3-207ENST00000536011 TMEM175Q9BSA9 504 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 GBP3Q9H0R5 595 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 ZBP1Q9H171 429 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 NRDE2Q9H7Z3 1164 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 MINDY3Q9H8M7 445 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 NR2E1Q9Y466 385 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 HCFC2Q9Y5Z7 792 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 IRAK3Q9Y616 596 aa14.6□□□□□ -0.07
RTN3-207ENST00000536011 INO80B-WBP1J3KQ70 363 aa14.59□□□□□ -0.07
RTN3-207ENST00000536011 DTNBO60941 627 aa14.59□□□□□ -0.07
RTN3-207ENST00000536011 GALTP07902 379 aa14.59□□□□□ -0.07
RTN3-207ENST00000536011 CTSAP10619 480 aa14.59□□□□□ -0.07
RTN3-207ENST00000536011 XRCC6P12956 609 aaKnown RBP eCLIP14.59□□□□□ -0.07
RTN3-207ENST00000536011 ITGA4P13612 1032 aa14.59□□□□□ -0.07
RTN3-207ENST00000536011 NCLP19338 710 aaKnown RBP14.59□□□□□ -0.07
RTN3-207ENST00000536011 HOXA11P31270 313 aaPredicted RBP14.59□□□□□ -0.07
RTN3-207ENST00000536011 FOSBP53539 338 aa14.59□□□□□ -0.07
RTN3-207ENST00000536011 PTENP60484 403 aa14.59□□□□□ -0.07
RTN3-207ENST00000536011 IFNLR1Q8IU57 520 aaPredicted RBP14.59□□□□□ -0.07
RTN3-207ENST00000536011 ERMNQ8TAM6 284 aa14.59□□□□□ -0.07
RTN3-207ENST00000536011 C8orf76Q96K31 380 aa14.59□□□□□ -0.07
RTN3-207ENST00000536011 RIPOR3Q96MK2 946 aa14.59□□□□□ -0.07
RTN3-207ENST00000536011 MTMR9Q96QG7 549 aa14.59□□□□□ -0.07
RTN3-207ENST00000536011 NFKBIZQ9BYH8 718 aa14.59□□□□□ -0.07
RTN3-207ENST00000536011 TRIM6Q9C030 488 aaPredicted RBP14.59□□□□□ -0.07
RTN3-207ENST00000536011 S1PR5Q9H228 398 aa14.59□□□□□ -0.07
RTN3-207ENST00000536011 TSPAN1O60635 241 aa14.58□□□□□ -0.08
RTN3-207ENST00000536011 CLASP2O75122 1294 aaKnown RBP14.58□□□□□ -0.08
RTN3-207ENST00000536011 NR1I2O75469 434 aa14.58□□□□□ -0.08
RTN3-207ENST00000536011 ALDH2P05091 517 aa14.58□□□□□ -0.08
RTN3-207ENST00000536011 MTHFRP42898 656 aa14.58□□□□□ -0.08
RTN3-207ENST00000536011 RARRES1P49788 294 aa14.58□□□□□ -0.08
RTN3-207ENST00000536011 HMGN5P82970 282 aaKnown RBP14.58□□□□□ -0.08
RTN3-207ENST00000536011 GNL2Q13823 731 aaKnown RBP14.58□□□□□ -0.08
RTN3-207ENST00000536011 SYCE2Q6PIF2 218 aa14.58□□□□□ -0.08
RTN3-207ENST00000536011 ELMSAN1Q6PJG2 1045 aa14.58□□□□□ -0.08
RTN3-207ENST00000536011 AGMOQ6ZNB7 445 aa14.58□□□□□ -0.08
RTN3-207ENST00000536011 MCPH1Q8NEM0 835 aa14.58□□□□□ -0.08
RTN3-207ENST00000536011 ZSCAN31Q96LW9 406 aaPredicted RBP14.58□□□□□ -0.08
RTN3-207ENST00000536011 EMILIN2Q9BXX0 1053 aa14.58□□□□□ -0.08
RTN3-207ENST00000536011 ADAM7Q9H2U9 754 aa14.58□□□□□ -0.08
RTN3-207ENST00000536011 TUFT1Q9NNX1 390 aa14.58□□□□□ -0.08
RTN3-207ENST00000536011 XPNPEP1Q9NQW7 623 aa14.58□□□□□ -0.08
RTN3-207ENST00000536011 SSX2IPQ9Y2D8 614 aa14.58□□□□□ -0.08
RTN3-207ENST00000536011 MUC6Q6W4X9 2439 aa14.57□□□□□ -0.08
RTN3-207ENST00000536011 MEIS3P2A8K0S8 358 aa14.57□□□□□ -0.08
RTN3-207ENST00000536011 ZBTB39O15060 712 aa14.57□□□□□ -0.08
RTN3-207ENST00000536011 CENPBP07199 599 aaPredicted RBP14.57□□□□□ -0.08
RTN3-207ENST00000536011 MCM7P33993 719 aa14.57□□□□□ -0.08
RTN3-207ENST00000536011 ARL2P36404 184 aa14.57□□□□□ -0.08
RTN3-207ENST00000536011 SLC11A1P49279 550 aa14.57□□□□□ -0.08
RTN3-207ENST00000536011 RBM25P49756 843 aaKnown RBP14.57□□□□□ -0.08
RTN3-207ENST00000536011 CAPSQ13938 189 aa14.57□□□□□ -0.08
RTN3-207ENST00000536011 UBXN11Q5T124 520 aa14.57□□□□□ -0.08
RTN3-207ENST00000536011 HFE2Q6ZVN8 426 aa14.57□□□□□ -0.08
RTN3-207ENST00000536011 TMEM173Q86WV6 379 aaPredicted RBP14.57□□□□□ -0.08
RTN3-207ENST00000536011 CSRNP2Q9H175 543 aa14.57□□□□□ -0.08
RTN3-207ENST00000536011 FOXP1Q9H334 677 aaPredicted RBP14.57□□□□□ -0.08
RTN3-207ENST00000536011 SH2B1Q9NRF2 756 aaPredicted RBP14.57□□□□□ -0.08
RTN3-207ENST00000536011 DNAJB4Q9UDY4 337 aa14.57□□□□□ -0.08
RTN3-207ENST00000536011 FAN1Q9Y2M0 1017 aa14.57□□□□□ -0.08
RTN3-207ENST00000536011 IPPQ9Y573 584 aa14.57□□□□□ -0.08
RTN3-207ENST00000536011 ZMYM2Q9UBW7 1377 aa14.57□□□□□ -0.08
RTN3-207ENST00000536011 POTEMA6NI47 508 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms