RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 DYDC2Q96IM9 177 aa4.44□□□□□ -1.7
CSMD3-210ENST00000534172 HAPLN2Q9GZV7 340 aa4.44□□□□□ -1.7
CSMD3-210ENST00000534172 KATNBL1Q9H079 304 aa4.44□□□□□ -1.7
CSMD3-210ENST00000534172 POFUT1Q9H488 388 aa4.44□□□□□ -1.7
CSMD3-210ENST00000534172 C14orf119Q9NWQ9 140 aa4.44□□□□□ -1.7
CSMD3-210ENST00000534172 ZBTB21Q9ULJ3 1066 aa4.44□□□□□ -1.7
CSMD3-210ENST00000534172 YEATS2Q9ULM3 1422 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 LRP5O75197 1615 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 AQRO60306 1485 aaKnown RBP eCLIP4.43□□□□□ -1.7
CSMD3-210ENST00000534172 ELL2O00472 640 aaPredicted RBP4.43□□□□□ -1.7
CSMD3-210ENST00000534172 PPFIA4O75335 1185 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 MT-CO1P00395 513 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 HMGCRP04035 888 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 CCND1P24385 295 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 VPS72Q15906 364 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 TRIM68Q6AZZ1 485 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 GLB1L2Q8IW92 636 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 LGI4Q8N135 537 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 MTG2Q9H4K7 406 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 TOPBP1Q92547 1522 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 PREX1Q8TCU6 1659 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 PMS2P1A4D2B8 440 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 FZD9O00144 591 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 RBP3P10745 1247 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 RALYLQ86SE5 291 aaKnown RBP4.43□□□□□ -1.7
CSMD3-210ENST00000534172 WDR92Q96MX6 357 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 ARPC5LQ9BPX5 153 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 ANO3Q9BYT9 981 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 TCF7L1Q9HCS4 588 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 PPP2R3BQ9Y5P8 575 aa4.43□□□□□ -1.7
CSMD3-210ENST00000534172 ADCY10Q96PN6 1610 aa4.42□□□□□ -1.7
CSMD3-210ENST00000534172 SNUPNO95149 360 aaKnown RBP4.42□□□□□ -1.7
CSMD3-210ENST00000534172 U2AF1L5P0DN76 240 aaPredicted RBP4.42□□□□□ -1.7
CSMD3-210ENST00000534172 PF4V1P10720 104 aa4.42□□□□□ -1.7
CSMD3-210ENST00000534172 SCAND1P57086 179 aa4.42□□□□□ -1.7
CSMD3-210ENST00000534172 U2AF1Q01081 240 aaKnown RBP eCLIP4.42□□□□□ -1.7
CSMD3-210ENST00000534172 ZNF124Q15973 351 aa4.42□□□□□ -1.7
CSMD3-210ENST00000534172 ZNF827Q17R98 1081 aa4.42□□□□□ -1.7
CSMD3-210ENST00000534172 CCDC62Q6P9F0 684 aa4.42□□□□□ -1.7
CSMD3-210ENST00000534172 ZNF761Q86XN6 746 aaPredicted RBP4.42□□□□□ -1.7
CSMD3-210ENST00000534172 TP53I13Q8NBR0 393 aaPredicted RBP4.42□□□□□ -1.7
CSMD3-210ENST00000534172 NUDT10Q8NFP7 164 aa4.42□□□□□ -1.7
CSMD3-210ENST00000534172 TIFAQ96CG3 184 aa4.42□□□□□ -1.7
CSMD3-210ENST00000534172 NUDT11Q96G61 164 aa4.42□□□□□ -1.7
CSMD3-210ENST00000534172 UBA5Q9GZZ9 404 aa4.42□□□□□ -1.7
CSMD3-210ENST00000534172 USP40Q9NVE5 1235 aa4.42□□□□□ -1.7
CSMD3-210ENST00000534172 MKS1Q9NXB0 559 aa4.42□□□□□ -1.7
CSMD3-210ENST00000534172 TERF2IPQ9NYB0 399 aa4.42□□□□□ -1.7
CSMD3-210ENST00000534172 MADDQ8WXG6 1647 aa4.42□□□□□ -1.7
CSMD3-210ENST00000534172 PAX3P23760 479 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 CFPP27918 469 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 CSF2RBP32927 897 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 GPR3P46089 330 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 KCNQ1P51787 676 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 NFYCQ13952 458 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 DHX8Q14562 1220 aaKnown RBP4.41□□□□□ -1.7
CSMD3-210ENST00000534172 RTP5Q14D33 572 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 PCBP2Q15366 365 aaKnown RBP eCLIP4.41□□□□□ -1.7
CSMD3-210ENST00000534172 MCTP2Q6DN12 878 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 UNC5BQ8IZJ1 945 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 C1orf162Q8NEQ5 155 aaPredicted RBP4.41□□□□□ -1.7
CSMD3-210ENST00000534172 PPP1R14CQ8TAE6 165 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 GAB3Q8WWW8 586 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 SLC7A6OSQ96CW6 309 aaPredicted RBP4.41□□□□□ -1.7
CSMD3-210ENST00000534172 FAXDC2Q96IV6 333 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 DNAJC28Q9NX36 388 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 PRSS50Q9UI38 385 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 CDY2AQ9Y6F7 541 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 KLHL33A6NCF5 533 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 IFRD1O00458 451 aaPredicted RBP4.41□□□□□ -1.7
CSMD3-210ENST00000534172 PCDH8O95206 1070 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 PURAQ00577 322 aaKnown RBP4.41□□□□□ -1.7
CSMD3-210ENST00000534172 MINDY4Q4G0A6 757 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 ZBTB41Q5SVQ8 909 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 PGM2L1Q6PCE3 622 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 LMBR1LQ6UX01 489 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 CPA6Q8N4T0 437 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.41□□□□□ -1.7
CSMD3-210ENST00000534172 EAF2Q96CJ1 260 aaPredicted RBP4.41□□□□□ -1.7
CSMD3-210ENST00000534172 OR10A2Q9H208 303 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 SEC61A2Q9H9S3 476 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 PRDM11Q9NQV5 511 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 PNMA8BQ9ULN7 279 aaPredicted RBP4.41□□□□□ -1.7
CSMD3-210ENST00000534172 ANKRD6Q9Y2G4 727 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 GPR45Q9Y5Y3 372 aa4.41□□□□□ -1.7
CSMD3-210ENST00000534172 SETD1AO15047 1707 aaKnown RBP4.41□□□□□ -1.7
CSMD3-210ENST00000534172 PHF2O75151 1096 aa4.4□□□□□ -1.7
CSMD3-210ENST00000534172 TRIM27P14373 513 aa4.4□□□□□ -1.7
CSMD3-210ENST00000534172 RECQLP46063 649 aaPredicted RBP4.4□□□□□ -1.7
CSMD3-210ENST00000534172 PPARAQ07869 468 aa4.4□□□□□ -1.7
CSMD3-210ENST00000534172 PDCD1Q15116 288 aa4.4□□□□□ -1.7
CSMD3-210ENST00000534172 MUM1Q2TAK8 710 aa4.4□□□□□ -1.7
CSMD3-210ENST00000534172 LONRF3Q496Y0 759 aa4.4□□□□□ -1.7
CSMD3-210ENST00000534172 CT83Q5H943 113 aa4.4□□□□□ -1.7
CSMD3-210ENST00000534172 C10orf62Q5T681 223 aaPredicted RBP4.4□□□□□ -1.7
CSMD3-210ENST00000534172 KCTD10Q9H3F6 313 aa4.4□□□□□ -1.7
CSMD3-210ENST00000534172 C14orf93Q9H972 538 aaKnown RBP4.4□□□□□ -1.7
CSMD3-210ENST00000534172 SAP30BPQ9UHR5 308 aaKnown RBP4.4□□□□□ -1.7
CSMD3-210ENST00000534172 USP18Q9UMW8 372 aa4.4□□□□□ -1.7
CSMD3-210ENST00000534172 DNMBPQ6XZF7 1577 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms