RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 BRWD1Q9NSI6 2320 aa23.13■■□□□ 1.29
VPS28-203ENST00000524521 TCF20Q9UGU0 1960 aaKnown RBP23.13■■□□□ 1.29
VPS28-203ENST00000524521 B4GALT5O43286 388 aa23.13■■□□□ 1.29
VPS28-203ENST00000524521 NCK2O43639 380 aa23.13■■□□□ 1.29
VPS28-203ENST00000524521 ITGA4P13612 1032 aa23.13■■□□□ 1.29
VPS28-203ENST00000524521 NCLP19338 710 aaKnown RBP23.13■■□□□ 1.29
VPS28-203ENST00000524521 SYT1P21579 422 aa23.13■■□□□ 1.29
VPS28-203ENST00000524521 GTF2F1P35269 517 aaKnown RBP eCLIP23.13■■□□□ 1.29
VPS28-203ENST00000524521 PPM1AP35813 382 aa23.13■■□□□ 1.29
VPS28-203ENST00000524521 ALDH7A1P49419 539 aaKnown RBP23.13■■□□□ 1.29
VPS28-203ENST00000524521 PLCB3Q01970 1234 aa23.13■■□□□ 1.29
VPS28-203ENST00000524521 KRT17Q04695 432 aa23.13■■□□□ 1.29
VPS28-203ENST00000524521 RNASELQ05823 741 aaKnown RBP23.13■■□□□ 1.29
VPS28-203ENST00000524521 SMG8Q8ND04 991 aaKnown RBP23.13■■□□□ 1.29
VPS28-203ENST00000524521 MRPS27Q92552 414 aaKnown RBP23.13■■□□□ 1.29
VPS28-203ENST00000524521 CCDC51Q96ER9 411 aa23.13■■□□□ 1.29
VPS28-203ENST00000524521 PLIN2Q99541 437 aa23.13■■□□□ 1.29
VPS28-203ENST00000524521 RSAD1Q9HA92 442 aa23.13■■□□□ 1.29
VPS28-203ENST00000524521 TLR9Q9NR96 1032 aa23.13■■□□□ 1.29
VPS28-203ENST00000524521 TBC1D13Q9NVG8 400 aa23.13■■□□□ 1.29
VPS28-203ENST00000524521 PCDHGC5Q9Y5F6 944 aa23.13■■□□□ 1.29
VPS28-203ENST00000524521 REV3LO60673 3130 aa23.13■■□□□ 1.29
VPS28-203ENST00000524521 ATG2AQ2TAZ0 1938 aa23.13■■□□□ 1.29
VPS28-203ENST00000524521 NT5C1B-RDH14C9J2C7 533 aa23.12■■□□□ 1.29
VPS28-203ENST00000524521 ZC3H11AO75152 810 aaKnown RBP eCLIP23.12■■□□□ 1.29
VPS28-203ENST00000524521 NAMPTP43490 491 aa23.12■■□□□ 1.29
VPS28-203ENST00000524521 BCAR1P56945 870 aa23.12■■□□□ 1.29
VPS28-203ENST00000524521 ERVFC1P60507 584 aa23.12■■□□□ 1.29
VPS28-203ENST00000524521 PPP2R5AQ15172 486 aa23.12■■□□□ 1.29
VPS28-203ENST00000524521 SF3A1Q15459 793 aaKnown RBP23.12■■□□□ 1.29
VPS28-203ENST00000524521 CDCA2Q69YH5 1023 aaPredicted RBP23.12■■□□□ 1.29
VPS28-203ENST00000524521 KCNK18Q7Z418 384 aa23.12■■□□□ 1.29
VPS28-203ENST00000524521 ADGRD2Q7Z7M1 963 aa23.12■■□□□ 1.29
VPS28-203ENST00000524521 RBM23Q86U06 439 aaKnown RBP23.12■■□□□ 1.29
VPS28-203ENST00000524521 CDR2LQ86X02 465 aaPredicted RBP23.12■■□□□ 1.29
VPS28-203ENST00000524521 DEPTORQ8TB45 409 aa23.12■■□□□ 1.29
VPS28-203ENST00000524521 URGCPQ8TCY9 931 aa23.12■■□□□ 1.29
VPS28-203ENST00000524521 KIFAP3Q92845 792 aa23.12■■□□□ 1.29
VPS28-203ENST00000524521 IFT74Q96LB3 600 aa23.12■■□□□ 1.29
VPS28-203ENST00000524521 TRIM6Q9C030 488 aaPredicted RBP23.12■■□□□ 1.29
VPS28-203ENST00000524521 GBP3Q9H0R5 595 aa23.12■■□□□ 1.29
VPS28-203ENST00000524521 C2orf40Q9H1Z8 148 aa23.12■■□□□ 1.29
VPS28-203ENST00000524521 PRMT7Q9NVM4 692 aaPredicted RBP23.12■■□□□ 1.29
VPS28-203ENST00000524521 LZTS1Q9Y250 596 aa23.12■■□□□ 1.29
VPS28-203ENST00000524521 IPPQ9Y573 584 aa23.12■■□□□ 1.29
VPS28-203ENST00000524521 CNTNAP2Q9UHC6 1331 aa23.11■■□□□ 1.29
VPS28-203ENST00000524521 CUL9Q8IWT3 2517 aa23.11■■□□□ 1.29
VPS28-203ENST00000524521 H3BQ06 376 aaPredicted RBP23.11■■□□□ 1.29
VPS28-203ENST00000524521 BMP15O95972 392 aa23.11■■□□□ 1.29
VPS28-203ENST00000524521 LIG1P18858 919 aa23.11■■□□□ 1.29
VPS28-203ENST00000524521 LEXMQ3ZCV2 418 aa23.11■■□□□ 1.29
VPS28-203ENST00000524521 SLC39A11Q8N1S5 342 aa23.11■■□□□ 1.29
VPS28-203ENST00000524521 CDK5RAP3Q96JB5 506 aa23.11■■□□□ 1.29
VPS28-203ENST00000524521 UHRF1Q96T88 793 aaPredicted RBP23.11■■□□□ 1.29
VPS28-203ENST00000524521 RNF39Q9H2S5 420 aa23.11■■□□□ 1.29
VPS28-203ENST00000524521 FZD8Q9H461 694 aa23.11■■□□□ 1.29
VPS28-203ENST00000524521 NRDE2Q9H7Z3 1164 aa23.11■■□□□ 1.29
VPS28-203ENST00000524521 UBN1Q9NPG3 1134 aa23.11■■□□□ 1.29
VPS28-203ENST00000524521 HES2Q9Y543 173 aa23.11■■□□□ 1.29
VPS28-203ENST00000524521 A0A1B0GUA9 196 aa23.1■■□□□ 1.29
VPS28-203ENST00000524521 NPTXRO95502 500 aa23.1■■□□□ 1.29
VPS28-203ENST00000524521 SSBP05455 408 aaKnown RBP eCLIP23.1■■□□□ 1.29
VPS28-203ENST00000524521 NRIP1P48552 1158 aa23.1■■□□□ 1.29
VPS28-203ENST00000524521 AFF1P51825 1210 aaKnown RBP23.1■■□□□ 1.29
VPS28-203ENST00000524521 COL19A1Q14993 1142 aa23.1■■□□□ 1.29
VPS28-203ENST00000524521 TMEM132AQ24JP5 1023 aa23.1■■□□□ 1.29
VPS28-203ENST00000524521 HYIQ5T013 277 aa23.1■■□□□ 1.29
VPS28-203ENST00000524521 SLC27A1Q6PCB7 646 aa23.1■■□□□ 1.29
VPS28-203ENST00000524521 PPP4R3CPQ6ZMV5 832 aa23.1■■□□□ 1.29
VPS28-203ENST00000524521 GADD45GIP1Q8TAE8 222 aaPredicted RBP23.1■■□□□ 1.29
VPS28-203ENST00000524521 SNX21Q969T3 373 aa23.1■■□□□ 1.29
VPS28-203ENST00000524521 PRIMPOLQ96LW4 560 aa23.1■■□□□ 1.29
VPS28-203ENST00000524521 PNMA5Q96PV4 448 aa23.1■■□□□ 1.29
VPS28-203ENST00000524521 APOL6Q9BWW8 343 aa23.1■■□□□ 1.29
VPS28-203ENST00000524521 NT5C3AQ9H0P0 336 aa23.1■■□□□ 1.29
VPS28-203ENST00000524521 TLE6Q9H808 572 aa23.1■■□□□ 1.29
VPS28-203ENST00000524521 KANSL3Q9P2N6 904 aa23.1■■□□□ 1.29
VPS28-203ENST00000524521 LINC01565O15544 149 aa23.09■■□□□ 1.29
VPS28-203ENST00000524521 ADAM15Q13444 863 aa23.09■■□□□ 1.29
VPS28-203ENST00000524521 MAPK6Q16659 721 aa23.09■■□□□ 1.29
VPS28-203ENST00000524521 FAM187BQ17R55 369 aa23.09■■□□□ 1.29
VPS28-203ENST00000524521 CTC1Q2NKJ3 1217 aa23.09■■□□□ 1.29
VPS28-203ENST00000524521 PDE12Q6L8Q7 609 aaKnown RBP23.09■■□□□ 1.29
VPS28-203ENST00000524521 RINT1Q6NUQ1 792 aa23.09■■□□□ 1.29
VPS28-203ENST00000524521 CABP7Q86V35 215 aa23.09■■□□□ 1.29
VPS28-203ENST00000524521 ZNF280BQ86YH2 543 aa23.09■■□□□ 1.29
VPS28-203ENST00000524521 AK8Q96MA6 479 aa23.09■■□□□ 1.29
VPS28-203ENST00000524521 NECAB3Q96P71 396 aaPredicted RBP23.09■■□□□ 1.29
VPS28-203ENST00000524521 FAM193BQ96PV7 902 aaPredicted RBP23.09■■□□□ 1.29
VPS28-203ENST00000524521 KIFC3Q9BVG8 833 aa23.09■■□□□ 1.29
VPS28-203ENST00000524521 RUSC1Q9BVN2 902 aa23.09■■□□□ 1.29
VPS28-203ENST00000524521 ENTPD7Q9NQZ7 604 aa23.09■■□□□ 1.29
VPS28-203ENST00000524521 HIP1RO75146 1068 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 POMCP01189 267 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 PRKCBP05771 671 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 GALTP07902 379 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 LTBRP36941 435 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 UBA7P41226 1012 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 RESTQ13127 1097 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 PRPF4BQ13523 1007 aaKnown RBP23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms