RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 A0A1B0GUA9 196 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 A0A1B0GVL5 298 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 HOXA2O43364 376 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 ZNF623O75123 536 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 PRKCBP05771 671 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 SLFN14P0C7P3 912 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 PFKFB1P16118 471 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 GAP43P17677 238 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 PBX2P40425 430 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 PRPF4BQ13523 1007 aaKnown RBP15.72■□□□□ 0.11
NUP54-216ENST00000514901 AMHR2Q16671 573 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 FAM117BQ6P1L5 589 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 ECHDC2Q86YB7 292 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 CEP57L1Q8IYX8 460 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 CNNM3Q8NE01 707 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 RSPH1Q8WYR4 309 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 MRPS27Q92552 414 aaKnown RBP15.72■□□□□ 0.11
NUP54-216ENST00000514901 LRCH3Q96II8 777 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 CCDC113Q9H0I3 377 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 SLC28A3Q9HAS3 691 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 SEL1LQ9UBV2 794 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 HPSEQ9Y251 543 aa15.72■□□□□ 0.11
NUP54-216ENST00000514901 SLC16A4O15374 487 aa15.71■□□□□ 0.11
NUP54-216ENST00000514901 DGKIO75912 1065 aa15.71■□□□□ 0.11
NUP54-216ENST00000514901 MAPTP10636 758 aaKnown RBP15.71■□□□□ 0.11
NUP54-216ENST00000514901 ARF4P18085 180 aaPredicted RBP15.71■□□□□ 0.11
NUP54-216ENST00000514901 SYKP43405 635 aa15.71■□□□□ 0.11
NUP54-216ENST00000514901 CACNB1Q02641 598 aaPredicted RBP15.71■□□□□ 0.11
NUP54-216ENST00000514901 CNNM4Q6P4Q7 775 aa15.71■□□□□ 0.11
NUP54-216ENST00000514901 DYMQ7RTS9 669 aa15.71■□□□□ 0.11
NUP54-216ENST00000514901 APBB1IPQ7Z5R6 666 aaPredicted RBP15.71■□□□□ 0.11
NUP54-216ENST00000514901 TMCO2Q7Z6W1 182 aaPredicted RBP15.71■□□□□ 0.11
NUP54-216ENST00000514901 FSIP1Q8NA03 581 aa15.71■□□□□ 0.11
NUP54-216ENST00000514901 TMEM161BQ8NDZ6 487 aa15.71■□□□□ 0.11
NUP54-216ENST00000514901 DNAJC19Q96DA6 116 aa15.71■□□□□ 0.11
NUP54-216ENST00000514901 PGBD4Q96DM1 585 aa15.71■□□□□ 0.11
NUP54-216ENST00000514901 C7orf25Q9BPX7 421 aa15.71■□□□□ 0.11
NUP54-216ENST00000514901 KIFC3Q9BVG8 833 aa15.71■□□□□ 0.11
NUP54-216ENST00000514901 ZHX3Q9H4I2 956 aa15.71■□□□□ 0.11
NUP54-216ENST00000514901 FAM105AQ9NUU6 356 aa15.71■□□□□ 0.11
NUP54-216ENST00000514901 YBX2Q9Y2T7 364 aaKnown RBP15.71■□□□□ 0.11
NUP54-216ENST00000514901 ADGRA3Q8IWK6 1321 aa15.7■□□□□ 0.1
NUP54-216ENST00000514901 CNTNAP2Q9UHC6 1331 aa15.7■□□□□ 0.1
NUP54-216ENST00000514901 N4BP3O15049 544 aa15.7■□□□□ 0.1
NUP54-216ENST00000514901 TRAK2O60296 914 aa15.7■□□□□ 0.1
NUP54-216ENST00000514901 NCKAP1LP55160 1127 aa15.7■□□□□ 0.1
NUP54-216ENST00000514901 STRN3Q13033 797 aa15.7■□□□□ 0.1
NUP54-216ENST00000514901 TMEM132AQ24JP5 1023 aa15.7■□□□□ 0.1
NUP54-216ENST00000514901 ZNF697Q5TEC3 545 aa15.7■□□□□ 0.1
NUP54-216ENST00000514901 SLC27A1Q6PCB7 646 aa15.7■□□□□ 0.1
NUP54-216ENST00000514901 MRPL10Q7Z7H8 261 aaKnown RBP15.7■□□□□ 0.1
NUP54-216ENST00000514901 ZNF598Q86UK7 904 aaKnown RBP15.7■□□□□ 0.1
NUP54-216ENST00000514901 FAM178BQ8IXR5 827 aa15.7■□□□□ 0.1
NUP54-216ENST00000514901 CCDC65Q8IXS2 484 aa15.7■□□□□ 0.1
NUP54-216ENST00000514901 HACE1Q8IYU2 909 aa15.7■□□□□ 0.1
NUP54-216ENST00000514901 SP7Q8TDD2 431 aaPredicted RBP15.7■□□□□ 0.1
NUP54-216ENST00000514901 ZNF689Q96CS4 500 aaPredicted RBP15.7■□□□□ 0.1
NUP54-216ENST00000514901 CCDC34Q96HJ3 373 aa15.7■□□□□ 0.1
NUP54-216ENST00000514901 MRPL4Q9BYD3 311 aaKnown RBP15.7■□□□□ 0.1
NUP54-216ENST00000514901 NKX2-4Q9H2Z4 354 aa15.7■□□□□ 0.1
NUP54-216ENST00000514901 PCDHB2Q9Y5E7 798 aa15.7■□□□□ 0.1
NUP54-216ENST00000514901 PTPRSQ13332 1948 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 FRMD3A2A2Y4 597 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 RBAK-RBAKDNI3L0D1 243 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 B4GALT5O43286 388 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 MYL1P05976 194 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 CA3P07451 260 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 IDEP14735 1019 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 MYOGP15173 224 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 LIG1P18858 919 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 NDUFA8P51970 172 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 UBXN11Q5T124 520 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 PPP2R2DQ66LE6 453 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 HAUS6Q7Z4H7 955 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 CMTR2Q8IYT2 770 aaKnown RBP15.69■□□□□ 0.1
NUP54-216ENST00000514901 CPB2Q96IY4 423 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 ADPGKQ9BRR6 497 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 TRIM9Q9C026 710 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 TRIM6Q9C030 488 aaPredicted RBP15.69■□□□□ 0.1
NUP54-216ENST00000514901 ST6GALNAC4Q9H4F1 302 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 ZNF576Q9H609 170 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 UBN1Q9NPG3 1134 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 PANK4Q9NVE7 773 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 SERTAD1Q9UHV2 236 aa15.69■□□□□ 0.1
NUP54-216ENST00000514901 ACTN4O43707 911 aaKnown RBP15.68■□□□□ 0.1
NUP54-216ENST00000514901 IBSPP21815 317 aaPredicted RBP15.68■□□□□ 0.1
NUP54-216ENST00000514901 BTG3Q14201 252 aaPredicted RBP15.68■□□□□ 0.1
NUP54-216ENST00000514901 HERC4Q5GLZ8 1057 aaPredicted RBP15.68■□□□□ 0.1
NUP54-216ENST00000514901 NT5DC1Q5TFE4 455 aa15.68■□□□□ 0.1
NUP54-216ENST00000514901 ATF7IP2Q5U623 682 aa15.68■□□□□ 0.1
NUP54-216ENST00000514901 KANK3Q6NY19 840 aa15.68■□□□□ 0.1
NUP54-216ENST00000514901 ZNF720Q7Z2F6 126 aa15.68■□□□□ 0.1
NUP54-216ENST00000514901 ABI1Q8IZP0 508 aa15.68■□□□□ 0.1
NUP54-216ENST00000514901 FIBCD1Q8N539 461 aa15.68■□□□□ 0.1
NUP54-216ENST00000514901 STAMQ92783 540 aa15.68■□□□□ 0.1
NUP54-216ENST00000514901 SAMD11Q96NU1 681 aa15.68■□□□□ 0.1
NUP54-216ENST00000514901 ACO2Q99798 780 aaKnown RBP15.68■□□□□ 0.1
NUP54-216ENST00000514901 TMEM117Q9H0C3 514 aa15.68■□□□□ 0.1
NUP54-216ENST00000514901 SEMA6BQ9H3T3 888 aa15.68■□□□□ 0.1
NUP54-216ENST00000514901 RC3H2Q9HBD1 1191 aaKnown RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms