RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SLITRK3O94933 977 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 EVCP57679 992 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 MRPS6P82932 125 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 MCM6Q14566 821 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 ECM1Q16610 540 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 KCNK18Q7Z418 384 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 B3GALT6Q96L58 329 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 CELF4Q9BZC1 486 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 CYP26B1Q9NR63 512 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 POLIQ9UNA4 740 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 RRP15Q9Y3B9 282 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 BDP1A6H8Y1 2624 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 SLC16A4O15374 487 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 STAM2O75886 525 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 WEE2P0C1S8 567 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 CST5P28325 142 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 NT5C2P49902 561 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 AFF1P51825 1210 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 LPIN1Q14693 890 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 EMC2Q15006 297 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 DBN1Q16643 649 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 SKOR2Q2VWA4 1001 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 XKR3Q5GH77 459 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 MARCH8Q5T0T0 291 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 ZNF746Q6NUN9 644 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 PADI6Q6TGC4 694 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 OTUD6AQ7L8S5 288 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 SERINC5Q86VE9 423 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 GPIHBP1Q8IV16 184 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 DEPTORQ8TB45 409 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 HELQQ8TDG4 1101 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 MORC4Q8TE76 937 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 PSPC1Q8WXF1 523 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 GAS2L1Q99501 681 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 MMRN2Q9H8L6 949 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 A0A1B0GVL5 298 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 LGR5O75473 907 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 CD4P01730 458 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 SPATA31D3P0C874 917 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 PDCP20941 246 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 ICAM3P32942 547 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 MCM2P49736 904 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 JAK3P52333 1124 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 SNX1Q13596 522 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 PSRC1Q6PGN9 363 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 SPATA31D4Q6ZUB0 917 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 CABP7Q86V35 215 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 TAX1BP1Q86VP1 789 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 ETNPPLQ8TBG4 499 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 CTAGE1Q96RT6 745 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 CSRNP2Q9H175 543 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 MINDY3Q9H8M7 445 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 DNM3Q9UQ16 869 aa8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.65□□□□□ -1.02
LIMCH1-219ENST00000514096 SCN5AQ14524 2016 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 RBM47A0AV96 593 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 WDR5P61964 334 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 MTA1Q13330 715 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 MCTP2Q6DN12 878 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 SLFN12Q8IYM2 578 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 MYCT1Q8N699 235 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 CALML4Q96GE6 196 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 ZFP42Q96MM3 310 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 TOX2Q96NM4 488 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 CDX2Q99626 313 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 RAB34Q9BZG1 259 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 UBAP1Q9NZ09 502 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 PCDHB7Q9Y5E2 793 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 COL4A3BPQ9Y5P4 624 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 KNL1Q8NG31 2342 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 GREB1LQ9C091 1923 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 NAA25Q14CX7 972 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 XRRA1Q6P2D8 792 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 GPBP1Q86WP2 473 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 KCNV2Q8TDN2 545 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 SLC5A5Q92911 643 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 ELMO3Q96BJ8 720 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 MTRQ99707 1265 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 LLPHQ9BRT6 129 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 SPATS2LQ9NUQ6 558 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 Q9Y3F1 56 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 KIAA0355O15063 1070 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 RCAN1P53805 252 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 PTK7Q13308 1070 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 RBBP5Q15291 538 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 NELFCDQ8IXH7 590 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 NECAB3Q96P71 396 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 FAM193BQ96PV7 902 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 RIT2Q99578 217 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 CENPOQ9BU64 300 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 CDH22Q9UJ99 828 aa8.64□□□□□ -1.03
LIMCH1-219ENST00000514096 RRN3P2A6NIE6 340 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 MGEA5O60502 916 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 EIF4BP23588 611 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 E2F5Q15329 346 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 RILPL1Q5EBL4 403 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 GALNT17Q6IS24 598 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 TAF2Q6P1X5 1199 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 HERC6Q8IVU3 1022 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 CCDC112Q8NEF3 446 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms