RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 CCDC197Q8NCU1 140 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 FAM129AQ9BZQ8 928 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 GRHL1Q9NZI5 618 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 USP21Q9UK80 565 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 SBF2Q86WG5 1849 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 GOLGA8IPA6NC78 632 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 GOLGA8JA6NMD2 632 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 FOXO6A8MYZ6 492 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 RRP1BQ14684 758 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 PPP1R7Q15435 360 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 HIBCHQ6NVY1 386 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 PRMT1Q99873 361 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 CBWD1Q9BRT8 395 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 MKNK1Q9BUB5 465 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 DMAC2Q9NW81 257 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 CD2APQ9Y5K6 639 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 C5orf60A6NFR6 353 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 FAM187AA6NFU0 413 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 K7ENM7 598 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 SPOPO43791 374 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 HIP1RO75146 1068 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 PSMD10O75832 226 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 SGPL1O95470 568 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 PAEPP09466 180 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 PTGIRP43119 386 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 ACER1Q8TDN7 264 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 PCDHB18PQ96TA0 734 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 YY1AP1Q9H869 796 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 CNOT10Q9H9A5 744 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 RASAL2Q9UJF2 1139 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 CDK5RAP2Q96SN8 1893 aa9.98□□□□□ -0.81
LIMCH1-215ENST00000512632 POLRMTO00411 1230 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 HGSO14964 777 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 TRIM37O94972 964 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 BCRP11274 1271 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 SNX1Q13596 522 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 FAM133BQ5BKY9 247 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 PHLDB2Q86SQ0 1253 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 PARP9Q8IXQ6 854 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 UBL4BQ8N7F7 174 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 CCT6BQ92526 530 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 SGSM3Q96HU1 749 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 NACC1Q96RE7 527 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 ZNF577Q9BSK1 485 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 ADAM7Q9H2U9 754 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 TPX2Q9ULW0 747 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 RPTORQ8N122 1335 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 WNK3Q9BYP7 1800 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 GPC5P78333 572 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 RBM26Q5T8P6 1007 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 STXBP4Q6ZWJ1 553 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 PPM1KQ8N3J5 372 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 LMO3Q8TAP4 145 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 TUFT1Q9NNX1 390 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 MTRF1LQ9UGC7 380 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 BAIAP2L1Q9UHR4 511 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 CYP26A1O43174 497 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 PHF2O75151 1096 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 CALCAP01258 141 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 CREB1P16220 341 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 PRELPP51888 382 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 DRP2Q13474 957 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 DHX34Q14147 1143 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 RHOT2Q8IXI1 618 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 DAW1Q8N136 415 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 ZNF622Q969S3 477 aaKnown RBP eCLIP9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 CCDC127Q96BQ5 260 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 ZNF317Q96PQ6 595 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 LXNQ9BS40 222 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 UNC45AQ9H3U1 944 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 CCT8L1PA6NM43 557 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 ACSL3O95573 720 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 SNCBQ16143 134 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 PPP2R5EQ16537 467 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 PNMA8AQ86V59 439 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 FAM228AQ86W67 206 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 TCP11Q8WWU5 503 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 ZDHHC15Q96MV8 337 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 ZSWIM1Q9BR11 485 aa9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 DIS3Q9Y2L1 958 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-215ENST00000512632 SMCHD1A6NHR9 2005 aa9.96□□□□□ -0.81
LIMCH1-215ENST00000512632 FRMPD4Q14CM0 1322 aa9.96□□□□□ -0.81
LIMCH1-215ENST00000512632 RASGRF2O14827 1237 aa9.96□□□□□ -0.81
LIMCH1-215ENST00000512632 NUDT17P0C025 328 aa9.96□□□□□ -0.81
LIMCH1-215ENST00000512632 RARAP10276 462 aa9.96□□□□□ -0.81
LIMCH1-215ENST00000512632 VPS41P49754 854 aa9.96□□□□□ -0.81
LIMCH1-215ENST00000512632 TRIP13Q15645 432 aaPredicted RBP9.96□□□□□ -0.81
LIMCH1-215ENST00000512632 SLC15A2Q16348 729 aa9.96□□□□□ -0.81
LIMCH1-215ENST00000512632 CEP55Q53EZ4 464 aa9.96□□□□□ -0.81
LIMCH1-215ENST00000512632 SEL1L2Q5TEA6 688 aa9.96□□□□□ -0.81
LIMCH1-215ENST00000512632 DYDC1Q8WWB3 177 aa9.96□□□□□ -0.81
LIMCH1-215ENST00000512632 C1orf54Q8WWF1 131 aa9.96□□□□□ -0.81
LIMCH1-215ENST00000512632 TRPC6Q9Y210 931 aa9.96□□□□□ -0.81
LIMCH1-215ENST00000512632 STK24Q9Y6E0 443 aa9.96□□□□□ -0.81
LIMCH1-215ENST00000512632 TMEM150BA6NC51 233 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 ADRA2BP18089 450 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 CHRNA3P32297 505 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 MMP13P45452 471 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms