RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 CHERPQ8IWX8 916 aaKnown RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 BBS7Q8IWZ6 715 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 USP13Q92995 863 aaPredicted RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 PHF21AQ96BD5 680 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 SLC10A4Q96EP9 437 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 NOC4LQ9BVI4 516 aaKnown RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 SLITRK6Q9H5Y7 841 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 RETREG1Q9H6L5 497 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 MAGEE1Q9HCI5 957 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 AIPL1Q9NZN9 384 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 CEP72Q9P209 647 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 GTF3C4Q9UKN8 822 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 AGTPBP1Q9UPW5 1226 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 SPATA31A1Q5TZJ5 1347 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 KIAA1210Q9ULL0 1709 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 SH3D21A4FU49 640 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 MIF4GDA9UHW6 222 aaKnown RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 H0YCG3 227 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 SNAP23O00161 211 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 SMARCA5O60264 1052 aaPredicted RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 H2AFYO75367 372 aaKnown RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 PPP1R37O75864 691 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 SRGAP2CP0DJJ0 459 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 HSPD1P10809 573 aaKnown RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 VCLP18206 1134 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 GARTP22102 1010 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 POU1F1P28069 291 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 POLR2BP30876 1174 aaKnown RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 RORAP35398 523 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 IGHMBP2P38935 993 aaKnown RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 ACTN3Q08043 901 aaPredicted RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 RESTQ13127 1097 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 EMC2Q15006 297 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 TNFAIP8L3Q5GJ75 292 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 ZFP1Q6P2D0 407 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 ERICH5Q6P6B1 374 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 RASSF6Q6ZTQ3 369 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 COPS6Q7L5N1 327 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 RIC3Q7Z5B4 369 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 SLC22A15Q8IZD6 547 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 SPATA5Q8NB90 893 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 MDM1Q8TC05 714 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 ZBTB10Q96DT7 871 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 ACAP3Q96P50 834 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 MND1Q9BWT6 205 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 CEP44Q9C0F1 390 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 SYNDIG1Q9H7V2 258 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 GPAMQ9HCL2 828 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 KLHL1Q9NR64 748 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 CREBZFQ9NS37 354 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 GIN1Q9NXP7 522 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 MCM8Q9UJA3 840 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 NFU1Q9UMS0 254 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 PLCH1Q4KWH8 1693 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 A0A0G2JPF8 293 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 A0A1W2PQ27 194 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 A0A1W2PQ64 194 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 A0A1W2PQD8 194 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 GSAPA4D1B5 854 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 HNRNPCL3B7ZW38 293 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 TAF4O00268 1085 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 DYNC1LI2O43237 492 aaPredicted RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 TRIM13O60858 407 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 UFL1O94874 794 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 DLGAP3O95886 979 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 HNRNPCL4P0DMR1 293 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 VAV1P15498 845 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 ATF6P18850 670 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 PLCG1P19174 1290 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 MSH3P20585 1137 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 NFKBIAP25963 317 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 ZNF846Q147U1 533 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 PITRM1Q5JRX3 1037 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 WDR44Q5JSH3 913 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 LHFPL3Q86UP9 236 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 ERICH1Q86X53 443 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 FAM9CQ8IZT9 166 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 GALNT6Q8NCL4 622 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 SPDYE1Q8NFV5 336 aaPredicted RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 BBS4Q96RK4 519 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 AIF1LQ9BQI0 150 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 BPIFA3Q9BQP9 254 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 TRIM51Q9BSJ1 452 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 PRRG3Q9BZD7 231 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 TM6SF1Q9BZW5 370 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 ACAD9Q9H845 621 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 RHBDL2Q9NX52 303 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 RAB20Q9NX57 234 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 APPL1Q9UKG1 709 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 VAV3Q9UKW4 847 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 XRN1Q8IZH2 1706 aaKnown RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 CASZ1Q86V15 1759 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 BCL9O00512 1426 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 THSD7AQ9UPZ6 1657 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 ARHGEF33A8MVX0 844 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 ZNF213O14771 459 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 MTSS1O43312 755 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 NPR3P17342 541 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 S100A12P80511 92 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 TDGQ13569 410 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms