RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 NPTXRO95502 500 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 NR3C1P04150 777 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 TPBGLP0DKB5 382 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 ATP6V1C1P21283 382 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 PAPOLAP51003 745 aaKnown RBP18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 ANKRD42Q8N9B4 389 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 STK32AQ8WU08 396 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 KRT35Q92764 455 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 GRAMD1AQ96CP6 724 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 MAGEB18Q96M61 343 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 DHX36Q9H2U1 1008 aaKnown RBP18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 ZNF287Q9HBT7 754 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 CYP39A1Q9NYL5 469 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 MARCH6O60337 910 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 GIT2Q14161 759 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 SGSM1Q2NKQ1 1148 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 SPTY2D1Q68D10 685 aaPredicted RBP18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 CWF19L1Q69YN2 538 aaKnown RBP18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 C11orf63Q6NUN7 778 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 MFN1Q8IWA4 741 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 GDAP1Q8TB36 358 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 PIGOQ8TEQ8 1089 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 TSC22D3Q99576 134 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 GPR88Q9GZN0 384 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 AAASQ9NRG9 546 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 PAPOLBQ9NRJ5 636 aaKnown RBP18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 TYW1Q9NV66 732 aaKnown RBP18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 TAS2R14Q9NYV8 317 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 CPSF2Q9P2I0 782 aaKnown RBP18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 JAG2Q9Y219 1238 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 ASTN1O14525 1302 aa18.38■□□□□ 0.53
SQSTM1-211ENST00000506690 EIF4E1BA6NMX2 242 aaKnown RBP18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 TP73O15350 636 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 KCNQ2O43526 872 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 ATP5HO75947 161 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 UPP2O95045 317 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 TTLL1O95922 423 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 CRKLP46109 303 aaKnown RBP18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 NOVP48745 357 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 MARCKSL1P49006 195 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 LBRQ14739 615 aaKnown RBP18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 DRAP1Q14919 205 aaPredicted RBP18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 UBL4BQ8N7F7 174 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 TGFBRAP1Q8WUH2 860 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 CEP95Q96GE4 821 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 BORCS6Q96GS4 357 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 ZSWIM1Q9BR11 485 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 KCNK9Q9NPC2 374 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 DDX60LQ5H9U9 1706 aaKnown RBP18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 C10orf71Q711Q0 1435 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 FRMPD4Q14CM0 1322 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 GPR75-ASB3A0A0A6YYF3 556 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 RPL13P26373 211 aaKnown RBP18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 COILP38432 576 aaPredicted RBP18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 CDK8P49336 464 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 UBE2SQ16763 222 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 BMT2Q1RMZ1 405 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 ERFEQ4G0M1 354 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 CCDC25Q86WR0 208 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 RHOT2Q8IXI1 618 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 LMNTD2Q8IXW0 634 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 AGGF1Q8N302 714 aaeCLIP18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 ENDOVQ8N8Q3 282 aaKnown RBP18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 ASB3Q9Y575 518 aa18.37■□□□□ 0.53
SQSTM1-211ENST00000506690 PASKQ96RG2 1323 aa18.36■□□□□ 0.53
SQSTM1-211ENST00000506690 LRRD1A4D1F6 860 aa18.36■□□□□ 0.53
SQSTM1-211ENST00000506690 MED24O75448 989 aa18.36■□□□□ 0.53
SQSTM1-211ENST00000506690 EYA4O95677 639 aa18.36■□□□□ 0.53
SQSTM1-211ENST00000506690 BRAFP15056 766 aa18.36■□□□□ 0.53
SQSTM1-211ENST00000506690 GM2AP17900 193 aa18.36■□□□□ 0.53
SQSTM1-211ENST00000506690 PEX5P50542 639 aa18.36■□□□□ 0.53
SQSTM1-211ENST00000506690 RAD23BP54727 409 aa18.36■□□□□ 0.53
SQSTM1-211ENST00000506690 ROR2Q01974 943 aaKnown RBP18.36■□□□□ 0.53
SQSTM1-211ENST00000506690 C16orf86Q6ZW13 317 aa18.36■□□□□ 0.53
SQSTM1-211ENST00000506690 SFR1Q86XK3 245 aa18.36■□□□□ 0.53
SQSTM1-211ENST00000506690 PALB2Q86YC2 1186 aa18.36■□□□□ 0.53
SQSTM1-211ENST00000506690 SLC17A8Q8NDX2 589 aa18.36■□□□□ 0.53
SQSTM1-211ENST00000506690 TMEM237Q96Q45 408 aa18.36■□□□□ 0.53
SQSTM1-211ENST00000506690 CTNNAL1Q9UBT7 734 aa18.36■□□□□ 0.53
SQSTM1-211ENST00000506690 NHSQ6T4R5 1651 aa18.36■□□□□ 0.53
SQSTM1-211ENST00000506690 HGSO14964 777 aaPredicted RBP18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 ACSL3O95573 720 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 STX2P32856 288 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 TUBP50607 506 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 PPP4CP60510 307 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 ITPK1Q13572 414 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 TCEAL1Q15170 157 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 PPP1R18Q6NYC8 613 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 CNBD1Q8NA66 436 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 C7orf43Q8WVR3 580 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 MYLK2Q9H1R3 596 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 SAP30BPQ9UHR5 308 aaKnown RBP18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 DNAJC12Q9UKB3 198 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 SPDYE5A6NIY4 337 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 FOXO6A8MYZ6 492 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 GNAT1P11488 350 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 TAC1P20366 129 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 RFC4P35249 363 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 CCDC105Q8IYK2 499 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms