RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 GOLGA3Q08378 1498 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 SOWAHDA6NJG2 315 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 IKBKBO14920 756 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 MAPK13O15264 365 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 MNDAP41218 407 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 FAPQ12884 760 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 INPP5AQ14642 412 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 BRD3Q15059 726 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 BRINP3Q76B58 766 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 METTL13Q8N6R0 699 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 RUNDC1Q96C34 613 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 ULK4Q96C45 1275 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 PAGE5Q96GU1 130 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 EXOC2Q96KP1 924 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 ZWILCHQ9H900 591 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 A1CFQ9NQ94 594 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 ITIH6Q6UXX5 1313 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 PNMA8CA0A1B0GUJ8 204 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 BTN3A3O00478 584 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 ZNF18P17022 549 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 GUCY2CP25092 1073 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 GJB2P29033 226 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 MECP2P51608 486 aaKnown RBP6.18□□□□□ -1.42
USF3-204ENST00000496826 COPS2P61201 443 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 AMPD2Q01433 879 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 YWHAHQ04917 246 aaPredicted RBP6.18□□□□□ -1.42
USF3-204ENST00000496826 DLG1Q12959 904 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 BIKQ13323 160 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 ZBTB6Q15916 424 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 RRAGBQ5VZM2 374 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 TRIM67Q6ZTA4 783 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 YAF2Q8IY57 180 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 TTC29Q8NA56 475 aaPredicted RBP6.18□□□□□ -1.42
USF3-204ENST00000496826 WDR36Q8NI36 951 aaKnown RBP6.18□□□□□ -1.42
USF3-204ENST00000496826 CNPPD1Q9BV87 410 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 PLEKHA5Q9HAU0 1116 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 RCOR1Q9UKL0 485 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 DNM3Q9UQ16 869 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 TRAF3IP3Q9Y228 551 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 TTLL3Q9Y4R7 772 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 PDE5AO76074 875 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 BAIAP3O94812 1187 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 UFL1O94874 794 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 MYL4P12829 197 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 GSTM2P28161 218 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 ELK3P41970 407 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 UBASH3AP57075 661 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 STXBP1P61764 594 aaKnown RBP6.18□□□□□ -1.42
USF3-204ENST00000496826 TMED2Q15363 201 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 SGSM1Q2NKQ1 1148 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 EDRF1Q3B7T1 1238 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 ZC2HC1CQ53FD0 456 aaPredicted RBP6.18□□□□□ -1.42
USF3-204ENST00000496826 SZRD1Q7Z422 152 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 THAP5Q7Z6K1 395 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 KLHL7Q8IXQ5 586 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 ASIC4Q96FT7 647 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 MYD88Q99836 296 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 APOL4Q9BPW4 351 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 GCOM2Q9BZD3 368 aaPredicted RBP6.18□□□□□ -1.42
USF3-204ENST00000496826 CLSTN2Q9H4D0 955 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 USE1Q9NZ43 259 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 MRFAP1Q9Y605 127 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 POLA1P09884 1462 aaPredicted RBP6.18□□□□□ -1.42
USF3-204ENST00000496826 GNB5O14775 395 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 AP3S2P59780 193 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 RPS8P62241 208 aaKnown RBP6.18□□□□□ -1.42
USF3-204ENST00000496826 S100A12P80511 92 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 RBL2Q08999 1139 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 GNPTABQ3T906 1256 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 PPP1R42Q7Z4L9 355 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 ZNF366Q8N895 744 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 POMGNT2Q8NAT1 580 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 POC1BQ8TC44 478 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 POP5Q969H6 163 aaKnown RBP6.18□□□□□ -1.42
USF3-204ENST00000496826 USP28Q96RU2 1077 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 PUS7LQ9H0K6 701 aaKnown RBP6.18□□□□□ -1.42
USF3-204ENST00000496826 MANSC1Q9H8J5 431 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 ADAM21Q9UKJ8 722 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 KLHL20Q9Y2M5 609 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 TRIM43BA6NCK2 446 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 TUBAL3A6NHL2 446 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 C2orf74A8MZ97 194 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 PCDHGA12O60330 932 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 IFNA16P05015 189 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 RPLP0P05388 317 aaKnown RBP6.18□□□□□ -1.42
USF3-204ENST00000496826 PDGFRBP09619 1106 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 ATP8B2P98198 1209 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 UBE3CQ15386 1083 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 SURF1Q15526 300 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 CCDC60Q8IWA6 550 aaPredicted RBP6.18□□□□□ -1.42
USF3-204ENST00000496826 BBS1Q8NFJ9 593 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 BTBD9Q96Q07 612 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 TMEM161AQ9NX61 479 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 CLRN2A0PK11 232 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 ENTPD5O75356 428 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 RTN3O95197 1032 aaPredicted RBP6.18□□□□□ -1.42
USF3-204ENST00000496826 HSD17B3P37058 310 aa6.18□□□□□ -1.42
USF3-204ENST00000496826 EXOSC10Q01780 885 aaKnown RBP6.18□□□□□ -1.42
USF3-204ENST00000496826 GNA13Q14344 377 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms