RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-208ENST00000489247 SLFN12Q8IYM2 578 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 SPC24Q8NBT2 197 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 NOC3LQ8WTT2 800 aaKnown RBP6.19□□□□□ -1.42
ATG4A-208ENST00000489247 CACTINQ8WUQ7 758 aaKnown RBP6.19□□□□□ -1.42
ATG4A-208ENST00000489247 RAD54LQ92698 747 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 RNF34Q969K3 372 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 CALML4Q96GE6 196 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 DHTKD1Q96HY7 919 aaPredicted RBP6.19□□□□□ -1.42
ATG4A-208ENST00000489247 C12orf42Q96LP6 360 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 CTAGE1Q96RT6 745 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 NUP88Q99567 741 aaPredicted RBP6.19□□□□□ -1.42
ATG4A-208ENST00000489247 KRTAP4-11Q9BYQ6 195 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 LRRC27Q9C0I9 530 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 NT5C3AQ9H0P0 336 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 MRPL18Q9H0U6 180 aaKnown RBP6.19□□□□□ -1.42
ATG4A-208ENST00000489247 TMX1Q9H3N1 280 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 VEZTQ9HBM0 779 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 OSGEPQ9NPF4 335 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 TPSG1Q9NRR2 321 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 MAP3K20Q9NYL2 800 aaKnown RBP6.19□□□□□ -1.42
ATG4A-208ENST00000489247 LRWD1Q9UFC0 647 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 LIMA1Q9UHB6 759 aaKnown RBP6.19□□□□□ -1.42
ATG4A-208ENST00000489247 NRBP1Q9UHY1 535 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 CNOT7Q9UIV1 285 aaKnown RBP6.19□□□□□ -1.42
ATG4A-208ENST00000489247 PYCARDQ9ULZ3 195 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 MRPL11Q9Y3B7 192 aaKnown RBP6.19□□□□□ -1.42
ATG4A-208ENST00000489247 RABGAP1Q9Y3P9 1069 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 FRMPD4Q14CM0 1322 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 ITIH6Q6UXX5 1313 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 PITPNM2Q9BZ72 1349 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 SYNRGQ9UMZ2 1314 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 KDM3AQ9Y4C1 1321 aa6.19□□□□□ -1.42
ATG4A-208ENST00000489247 ARFGEF1Q9Y6D6 1849 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 IGLV3-22A0A075B6J6 115 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 SHTN1A0MZ66 631 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 FRMD3A2A2Y4 597 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 H7C1D1 291 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 ICAM1P05362 532 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 CDC25AP30304 524 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 HSD17B4P51659 736 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 ZNF157P51786 506 aaPredicted RBP6.18□□□□□ -1.42
ATG4A-208ENST00000489247 USP14P54578 494 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 UBASH3AP57075 661 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 GSTM4Q03013 218 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 PAK1Q13153 545 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 KIF4BQ2VIQ3 1234 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 FAM83BQ5T0W9 1011 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 KRT79Q5XKE5 535 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 DCAF15Q66K64 600 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 USP17L6PQ6QN14 398 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 B3GNT9Q6UX72 402 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 UNC13DQ70J99 1090 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 NIPA1Q7RTP0 329 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 NT5DC4Q86YG4 428 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 GPC2Q8N158 579 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 C3orf58Q8NDZ4 430 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 CCDC112Q8NEF3 446 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 LARP4BQ92615 738 aaKnown RBP6.18□□□□□ -1.42
ATG4A-208ENST00000489247 WNT8BQ93098 351 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 CCDC47Q96A33 483 aaKnown RBP6.18□□□□□ -1.42
ATG4A-208ENST00000489247 MEGF10Q96KG7 1140 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 NAP1L5Q96NT1 182 aaPredicted RBP6.18□□□□□ -1.42
ATG4A-208ENST00000489247 ZNF341Q9BYN7 854 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 THAP9Q9H5L6 903 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 AKTIPQ9H8T0 292 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 GPRC5DQ9NZD1 345 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 ADD3Q9UEY8 706 aaKnown RBP6.18□□□□□ -1.42
ATG4A-208ENST00000489247 VAV3Q9UKW4 847 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 ZNF536O15090 1300 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 RPTORQ8N122 1335 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 ZNF541Q9H0D2 1346 aa6.18□□□□□ -1.42
ATG4A-208ENST00000489247 MYH8P13535 1937 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 BAZ2BQ9UIF8 2168 aaKnown RBP6.17□□□□□ -1.42
ATG4A-208ENST00000489247 GCOM1H8Y6P7 765 aaPredicted RBP6.17□□□□□ -1.42
ATG4A-208ENST00000489247 ATP2A1O14983 1001 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 DLGAP3O95886 979 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 SERPINC1P01008 464 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 POLR2MP0CAP2 368 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 LMNB1P20700 586 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 CCNE1P24864 410 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 EEF1GP26641 437 aaKnown RBP6.17□□□□□ -1.42
ATG4A-208ENST00000489247 RPA1P27694 616 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 CASP1P29466 404 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 GSTT1P30711 240 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 TECP42680 631 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 PRCPP42785 496 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 OAZ1P54368 228 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 RAD51AP2Q09MP3 1159 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 LRMPQ12912 555 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 STIM1Q13586 685 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 TAF1CQ15572 869 aaPredicted RBP6.17□□□□□ -1.42
ATG4A-208ENST00000489247 DUOXA2Q1HG44 320 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 HAUS3Q68CZ6 603 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 SPECC1LQ69YQ0 1117 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 ISM2Q6H9L7 571 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 CENPPQ6IPU0 288 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 TTI2Q6NXR4 508 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 ARMCX5Q6P1M9 558 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 SV2BQ7L1I2 683 aa6.17□□□□□ -1.42
ATG4A-208ENST00000489247 IRF2BP1Q8IU81 584 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms