RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 SLMAPQ14BN4 828 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 CNGA2Q16280 664 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 USH1GQ495M9 461 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 CCDC137Q6PK04 289 aaKnown RBP13.16□□□□□ -0.3
COL3A1-206ENST00000487010 TRPM8Q7Z2W7 1104 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 LMO3Q8TAP4 145 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 UHMK1Q8TAS1 419 aaKnown RBP13.16□□□□□ -0.3
COL3A1-206ENST00000487010 SLC20A1Q8WUM9 679 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 RPS6KC1Q96S38 1066 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 DNAJC18Q9H819 358 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 ATP6V0A4Q9HBG4 840 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 VEZTQ9HBM0 779 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 TUFT1Q9NNX1 390 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 CFAP73A6NFT4 308 aa13.15□□□□□ -0.3
COL3A1-206ENST00000487010 TMEM110-MUSTN1A8MSY1 372 aa13.15□□□□□ -0.3
COL3A1-206ENST00000487010 RASGRF2O14827 1237 aa13.15□□□□□ -0.3
COL3A1-206ENST00000487010 LRRN2O75325 713 aa13.15□□□□□ -0.3
COL3A1-206ENST00000487010 SLITRK3O94933 977 aa13.15□□□□□ -0.3
COL3A1-206ENST00000487010 CYP3A4P08684 503 aa13.15□□□□□ -0.3
COL3A1-206ENST00000487010 ZNF76P36508 570 aa13.15□□□□□ -0.3
COL3A1-206ENST00000487010 PEX5P50542 639 aa13.15□□□□□ -0.3
COL3A1-206ENST00000487010 GPC5P78333 572 aa13.15□□□□□ -0.3
COL3A1-206ENST00000487010 SF3A3Q12874 501 aaKnown RBP eCLIP13.15□□□□□ -0.3
COL3A1-206ENST00000487010 FAM196AQ6ZSG2 479 aa13.15□□□□□ -0.3
COL3A1-206ENST00000487010 TPH2Q8IWU9 490 aa13.15□□□□□ -0.3
COL3A1-206ENST00000487010 ART4Q93070 314 aa13.15□□□□□ -0.3
COL3A1-206ENST00000487010 NSRP1Q9H0G5 558 aaKnown RBP13.15□□□□□ -0.3
COL3A1-206ENST00000487010 SEL1LQ9UBV2 794 aa13.15□□□□□ -0.3
COL3A1-206ENST00000487010 AFF2P51816 1311 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 RIMBP2O15034 1052 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 KIF1CO43896 1103 aaKnown RBP13.14□□□□□ -0.31
COL3A1-206ENST00000487010 BCRP11274 1271 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 COMTP21964 271 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 SLCO1A2P46721 670 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 SCNN1DP51172 638 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 BFSP1Q12934 665 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 RIPK1Q13546 671 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 CYP1B1Q16678 543 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 SHROOM1Q2M3G4 852 aaPredicted RBP13.14□□□□□ -0.31
COL3A1-206ENST00000487010 SEL1L2Q5TEA6 688 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 MFSD5Q6N075 450 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 TLDC1Q6P9B6 456 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 STXBP4Q6ZWJ1 553 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 TAOK1Q7L7X3 1001 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 OTOP1Q7RTM1 612 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 ZFPM1Q8IX07 1006 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 DYDC2Q96IM9 177 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 COA1Q9GZY4 146 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 TAOK3Q9H2K8 898 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 BAIAP2L1Q9UHR4 511 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 DBR1Q9UK59 544 aaKnown RBP13.14□□□□□ -0.31
COL3A1-206ENST00000487010 ANKRD63C9JTQ0 380 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 ZBTB39O15060 712 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 SNX3O60493 162 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 HOXA13P31271 388 aaPredicted RBP13.14□□□□□ -0.31
COL3A1-206ENST00000487010 COILP38432 576 aaPredicted RBP13.14□□□□□ -0.31
COL3A1-206ENST00000487010 IFNAR2P48551 515 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 ZNF131P52739 623 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 NFIAQ12857 509 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 FAM133BQ5BKY9 247 aaKnown RBP13.14□□□□□ -0.31
COL3A1-206ENST00000487010 FAM182BQ5T319 152 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 CYFIP1Q7L576 1253 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 SIAH1Q8IUQ4 282 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 FAM178BQ8IXR5 827 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 MORC4Q8TE76 937 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 RUNDC3BQ96NL0 473 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 ROPN1BQ9BZX4 212 aaPredicted RBP13.14□□□□□ -0.31
COL3A1-206ENST00000487010 WNT8AQ9H1J5 351 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 ROPN1Q9HAT0 212 aaPredicted RBP13.14□□□□□ -0.31
COL3A1-206ENST00000487010 SUFUQ9UMX1 484 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 ADAMTSL1Q8N6G6 1762 aa13.14□□□□□ -0.31
COL3A1-206ENST00000487010 LTBP1Q14766 1721 aa13.13□□□□□ -0.31
COL3A1-206ENST00000487010 IGLV3-22A0A075B6J6 115 aa13.13□□□□□ -0.31
COL3A1-206ENST00000487010 OAS1P00973 400 aaKnown RBP13.13□□□□□ -0.31
COL3A1-206ENST00000487010 PYGMP11217 842 aa13.13□□□□□ -0.31
COL3A1-206ENST00000487010 TAL1P17542 331 aaPredicted RBP13.13□□□□□ -0.31
COL3A1-206ENST00000487010 PDE6CP51160 858 aa13.13□□□□□ -0.31
COL3A1-206ENST00000487010 MESDQ14696 234 aa13.13□□□□□ -0.31
COL3A1-206ENST00000487010 VPS72Q15906 364 aa13.13□□□□□ -0.31
COL3A1-206ENST00000487010 CERKLQ49MI3 558 aaPredicted RBP13.13□□□□□ -0.31
COL3A1-206ENST00000487010 APOBEC3HQ6NTF7 200 aaKnown RBP13.13□□□□□ -0.31
COL3A1-206ENST00000487010 CRELD2Q6UXH1 353 aaPredicted RBP13.13□□□□□ -0.31
COL3A1-206ENST00000487010 EXOC3L1Q86VI1 746 aa13.13□□□□□ -0.31
COL3A1-206ENST00000487010 SLC9A9Q8IVB4 645 aa13.13□□□□□ -0.31
COL3A1-206ENST00000487010 CCDC105Q8IYK2 499 aa13.13□□□□□ -0.31
COL3A1-206ENST00000487010 RPUSD2Q8IZ73 545 aaKnown RBP13.13□□□□□ -0.31
COL3A1-206ENST00000487010 TCP11Q8WWU5 503 aa13.13□□□□□ -0.31
COL3A1-206ENST00000487010 CD101Q93033 1021 aa13.13□□□□□ -0.31
COL3A1-206ENST00000487010 VTI1AQ96AJ9 217 aa13.13□□□□□ -0.31
COL3A1-206ENST00000487010 HOOK2Q96ED9 719 aa13.13□□□□□ -0.31
COL3A1-206ENST00000487010 UBE2TQ9NPD8 197 aaPredicted RBP13.13□□□□□ -0.31
COL3A1-206ENST00000487010 ABCF3Q9NUQ8 709 aa13.13□□□□□ -0.31
COL3A1-206ENST00000487010 PASKQ96RG2 1323 aa13.13□□□□□ -0.31
COL3A1-206ENST00000487010 LY75O60449 1722 aa13.13□□□□□ -0.31
COL3A1-206ENST00000487010 TCRBV7S2A1N4TA0A589 114 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 FAM196BA6NMK8 535 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 F5H6K3 240 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 EXOC3O60645 756 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 RTN2O75298 545 aa13.12□□□□□ -0.31
COL3A1-206ENST00000487010 MTA2O94776 668 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms