RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 RPS6KC1Q96S38 1066 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 SENP7Q9BQF6 1050 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 PHF20Q9BVI0 1012 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 EMILIN2Q9BXX0 1053 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 BCL11AQ9H165 835 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 VPS45Q9NRW7 570 aa5.55□□□□□ -1.52
USP4-209ENST00000475873 POLR3BQ9NW08 1133 aaPredicted RBP5.55□□□□□ -1.52
USP4-209ENST00000475873 COL5A1P20908 1838 aaPredicted RBP5.55□□□□□ -1.52
USP4-209ENST00000475873 PI4KAP42356 2102 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 A0A0U1RQF3 1178 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 TK2O00142 265 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 GPR182O15218 404 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 RNF113AO15541 343 aaKnown RBP5.54□□□□□ -1.52
USP4-209ENST00000475873 TGM5O43548 720 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 EXTL3O43909 919 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 DDHD2O94830 711 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 VTNP04004 478 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 RPLP2P05387 115 aaKnown RBP5.54□□□□□ -1.52
USP4-209ENST00000475873 IFIT2P09913 472 aaKnown RBP5.54□□□□□ -1.52
USP4-209ENST00000475873 RLBP1P12271 317 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 FGFR4P22455 802 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 KLRC1P26715 233 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 HOXA6P31267 233 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 AK2P54819 239 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 C1QBPQ07021 282 aaKnown RBP5.54□□□□□ -1.52
USP4-209ENST00000475873 PTGDRQ13258 359 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 BMS1Q14692 1282 aaKnown RBP5.54□□□□□ -1.52
USP4-209ENST00000475873 LONRF3Q496Y0 759 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 GPATCH4Q5T3I0 446 aaKnown RBP5.54□□□□□ -1.52
USP4-209ENST00000475873 VPS53Q5VIR6 699 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 DAB2IPQ5VWQ8 1189 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 TANGO2Q6ICL3 276 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 ZSCAN25Q6NSZ9 544 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 MTSS1LQ765P7 747 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 PIP4P1Q86T03 277 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 CLASRPQ8N2M8 674 aaKnown RBP5.54□□□□□ -1.52
USP4-209ENST00000475873 NME8Q8N427 588 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 KBTBD3Q8NAB2 608 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 GAB3Q8WWW8 586 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 ING5Q8WYH8 240 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 SEPT1Q8WYJ6 367 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 MTMR8Q96EF0 704 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 B3GALT6Q96L58 329 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 UBL7Q96S82 380 aaPredicted RBP5.54□□□□□ -1.52
USP4-209ENST00000475873 IER2Q9BTL4 223 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 MKNK1Q9BUB5 465 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 NAPBQ9H115 298 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 DUSP15Q9H1R2 295 aaPredicted RBP5.54□□□□□ -1.52
USP4-209ENST00000475873 CLMPQ9H6B4 373 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 PIDD1Q9HB75 910 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 RXFP1Q9HBX9 757 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 TCP11L1Q9NUJ3 509 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 HCFC1R1Q9NWW0 138 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 MARCH5Q9NX47 278 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 ANAPC4Q9UJX5 808 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 MRPS17Q9Y2R5 130 aaKnown RBP5.54□□□□□ -1.52
USP4-209ENST00000475873 PCDHGA5Q9Y5G8 931 aa5.54□□□□□ -1.52
USP4-209ENST00000475873 ZFP37Q9Y6Q3 630 aaPredicted RBP5.54□□□□□ -1.52
USP4-209ENST00000475873 PTPRBP23467 1997 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 BCLAF3A2AJT9 711 aaKnown RBP5.53□□□□□ -1.52
USP4-209ENST00000475873 DCLK1O15075 740 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 ZMYND10O75800 440 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 RPP40O75818 363 aaKnown RBP5.53□□□□□ -1.52
USP4-209ENST00000475873 ITGB5P18084 799 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 GNAT2P19087 354 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 CRYBB1P53674 252 aaPredicted RBP5.53□□□□□ -1.52
USP4-209ENST00000475873 SIM1P81133 766 aaPredicted RBP5.53□□□□□ -1.52
USP4-209ENST00000475873 GRM2Q14416 872 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 PPP2R5DQ14738 602 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 SLC5A9Q2M3M2 681 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 GNPTABQ3T906 1256 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 PLK5Q496M5 336 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 RRP12Q5JTH9 1297 aaKnown RBP5.53□□□□□ -1.52
USP4-209ENST00000475873 TSHZ3Q63HK5 1081 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 TXNDC11Q6PKC3 985 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 CACNA2D4Q7Z3S7 1137 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 PALB2Q86YC2 1186 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 GLYCTKQ8IVS8 523 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 SIRT2Q8IXJ6 389 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 STAG2Q8N3U4 1231 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 FAM3CQ92520 227 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 PHKBQ93100 1093 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 ZNF668Q96K58 619 aaPredicted RBP5.53□□□□□ -1.52
USP4-209ENST00000475873 ZC3H10Q96K80 434 aaKnown RBP5.53□□□□□ -1.52
USP4-209ENST00000475873 HERC2P3Q9BVR0 1158 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 MRPL9Q9BYD2 267 aaKnown RBP5.53□□□□□ -1.52
USP4-209ENST00000475873 GBP3Q9H0R5 595 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 FZD8Q9H461 694 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 SMARCAD1Q9H4L7 1026 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 CCDC86Q9H6F5 360 aaKnown RBP5.53□□□□□ -1.52
USP4-209ENST00000475873 VAT1LQ9HCJ6 419 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 MRPL17Q9NRX2 175 aaKnown RBP5.53□□□□□ -1.52
USP4-209ENST00000475873 ZDHHC7Q9NXF8 308 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 PKD2L1Q9P0L9 805 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 LRRK2Q5S007 2527 aa5.53□□□□□ -1.52
USP4-209ENST00000475873 PDCD11Q14690 1871 aaKnown RBP5.52□□□□□ -1.53
USP4-209ENST00000475873 KIF26AQ9ULI4 1882 aaPredicted RBP5.52□□□□□ -1.53
USP4-209ENST00000475873 FLNCQ14315 2725 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 AHCTF1Q8WYP5 2266 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 A0A087WV48 116 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 206.5 ms