RNA–Protein interactions for RNA: ENST00000473924.1

DDX56-209, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-209ENST00000473924 HPSEQ9Y251 543 aa13.68□□□□□ -0.22
DDX56-209ENST00000473924 INSL6Q9Y581 213 aa13.68□□□□□ -0.22
DDX56-209ENST00000473924 PTPRSQ13332 1948 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 A0A0U1RQF3 1178 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 K7ENM7 598 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 ACKR2O00590 384 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 B4GALT5O43286 388 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 TRAK2O60296 914 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 SLFN14P0C7P3 912 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 MYOGP15173 224 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 ARF4P18085 180 aaPredicted RBP13.67□□□□□ -0.22
DDX56-209ENST00000473924 HOXA11P31270 313 aaPredicted RBP13.67□□□□□ -0.22
DDX56-209ENST00000473924 AFMP43652 599 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 RAB27AP51159 221 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 ZNF131P52739 623 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 STRN3Q13033 797 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 AMHR2Q16671 573 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 FAM187BQ17R55 369 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 PPP4R3CPQ6ZMV5 832 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 ECHDC2Q86YB7 292 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 FAM178BQ8IXR5 827 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 CCDC65Q8IXS2 484 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 TIFAQ96CG3 184 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 CCDC51Q96ER9 411 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 TRIM6Q9C030 488 aaPredicted RBP13.67□□□□□ -0.22
DDX56-209ENST00000473924 CCDC113Q9H0I3 377 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 NKX2-4Q9H2Z4 354 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 TMEM134Q9H6X4 195 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 SLC28A3Q9HAS3 691 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 FAM105AQ9NUU6 356 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 TMEM161AQ9NX61 479 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 ARHGAP28Q9P2N2 729 aa13.67□□□□□ -0.22
DDX56-209ENST00000473924 CNTNAP2Q9UHC6 1331 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 CA3P07451 260 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 GAP43P17677 238 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 FXR1P51114 621 aaKnown RBP eCLIP13.66□□□□□ -0.22
DDX56-209ENST00000473924 NCKAP1LP55160 1127 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 ASIC1P78348 528 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 FAM189BP81408 668 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 LONRF3Q496Y0 759 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 HERC4Q5GLZ8 1057 aaPredicted RBP13.66□□□□□ -0.22
DDX56-209ENST00000473924 HAUS6Q7Z4H7 955 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 SFR1Q86XK3 245 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 DNAJC19Q96DA6 116 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 ADPGKQ9BRR6 497 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 TRAIPQ9BWF2 469 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 MRPL4Q9BYD3 311 aaKnown RBP13.66□□□□□ -0.22
DDX56-209ENST00000473924 TRIM9Q9C026 710 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 GOLPH3LQ9H4A5 285 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 ELAC1Q9H777 363 aaKnown RBP13.66□□□□□ -0.22
DDX56-209ENST00000473924 PANK4Q9NVE7 773 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 SEL1LQ9UBV2 794 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 YBX2Q9Y2T7 364 aaKnown RBP13.66□□□□□ -0.22
DDX56-209ENST00000473924 TTC3P53804 2025 aa13.66□□□□□ -0.22
DDX56-209ENST00000473924 GBF1Q92538 1859 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 FAM237AA0A1B0GTK4 181 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 A0A1B0GUA9 196 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 N4BP3O15049 544 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 HOXA2O43364 376 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 ACTN4O43707 911 aaKnown RBP13.65□□□□□ -0.22
DDX56-209ENST00000473924 DGKIO75912 1065 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 ZNF202O95125 648 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 EOMESO95936 686 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 SCP2P22307 547 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 ABCD1P33897 745 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 HTRA4P83105 476 aaPredicted RBP13.65□□□□□ -0.22
DDX56-209ENST00000473924 ZNF697Q5TEC3 545 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 ATF7IP2Q5U623 682 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 PPP2R2DQ66LE6 453 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 SLC27A1Q6PCB7 646 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 CDR2LQ86X02 465 aaPredicted RBP13.65□□□□□ -0.22
DDX56-209ENST00000473924 ABI1Q8IZP0 508 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 SLC17A8Q8NDX2 589 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 TMEM161BQ8NDZ6 487 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 CNNM3Q8NE01 707 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 PGBD4Q96DM1 585 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 BICD1Q96G01 975 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 CCDC34Q96HJ3 373 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 C7orf25Q9BPX7 421 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 BLZF1Q9H2G9 400 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 MRPL44Q9H9J2 332 aaKnown RBP13.65□□□□□ -0.22
DDX56-209ENST00000473924 USP20Q9Y2K6 914 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 PCDHB2Q9Y5E7 798 aa13.65□□□□□ -0.22
DDX56-209ENST00000473924 LCHNA4D1U4 455 aa13.64□□□□□ -0.23
DDX56-209ENST00000473924 TTLL13PA6NNM8 815 aa13.64□□□□□ -0.23
DDX56-209ENST00000473924 NPTXRO95502 500 aa13.64□□□□□ -0.23
DDX56-209ENST00000473924 MAPTP10636 758 aaKnown RBP13.64□□□□□ -0.23
DDX56-209ENST00000473924 FGFR1P11362 822 aa13.64□□□□□ -0.23
DDX56-209ENST00000473924 NMT1P30419 496 aaKnown RBP13.64□□□□□ -0.23
DDX56-209ENST00000473924 BTG3Q14201 252 aaPredicted RBP13.64□□□□□ -0.23
DDX56-209ENST00000473924 PAN2Q504Q3 1202 aaKnown RBP13.64□□□□□ -0.23
DDX56-209ENST00000473924 UBXN11Q5T124 520 aa13.64□□□□□ -0.23
DDX56-209ENST00000473924 KRBA2Q6ZNG9 492 aa13.64□□□□□ -0.23
DDX56-209ENST00000473924 APBB1IPQ7Z5R6 666 aaPredicted RBP13.64□□□□□ -0.23
DDX56-209ENST00000473924 GRAMD1CQ8IYS0 662 aa13.64□□□□□ -0.23
DDX56-209ENST00000473924 HACE1Q8IYU2 909 aa13.64□□□□□ -0.23
DDX56-209ENST00000473924 CRIPAKQ8N1N5 446 aa13.64□□□□□ -0.23
DDX56-209ENST00000473924 PAGE5Q96GU1 130 aa13.64□□□□□ -0.23
DDX56-209ENST00000473924 TCHPQ9BT92 498 aa13.64□□□□□ -0.23
DDX56-209ENST00000473924 EIF2AQ9BY44 585 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms