RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 ANXA13P27216 316 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 GNA11P29992 359 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 GRB10Q13322 594 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 COG2Q14746 738 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 KIAA0753Q2KHM9 967 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 ZCWPW2Q504Y3 356 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 OLFML2BQ68BL8 750 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 NEK8Q86SG6 692 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 TBC1D5Q92609 795 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 N4BP2L2Q92802 583 aaPredicted RBP10.39□□□□□ -0.75
HDAC3-205ENST00000469550 MCM9Q9NXL9 1143 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 HOXC10Q9NYD6 342 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 IVNS1ABPQ9Y6Y0 642 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 A0A087X0T9 212 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 PALM3A6NDB9 673 aaPredicted RBP10.39□□□□□ -0.75
HDAC3-205ENST00000469550 STRNO43815 780 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 FAM228BP0C875 321 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 CYBAP13498 195 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 DRD4P21917 467 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 TECP42680 631 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 FXR2P51116 673 aaKnown RBP eCLIP10.39□□□□□ -0.75
HDAC3-205ENST00000469550 RIPK1Q13546 671 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 PDIA5Q14554 519 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 QPCTQ16769 361 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 LRRC26Q2I0M4 334 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 CRELD2Q6UXH1 353 aaPredicted RBP10.39□□□□□ -0.75
HDAC3-205ENST00000469550 KLHL7Q8IXQ5 586 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 TDHQ8IZJ6 230 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 ABRAQ8N0Z2 381 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 RASGEF1CQ8N431 466 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 NPLOC4Q8TAT6 608 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 LARP4BQ92615 738 aaKnown RBP10.39□□□□□ -0.75
HDAC3-205ENST00000469550 HPS3Q969F9 1004 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 TLCD1Q96CP7 247 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 LRCH3Q96II8 777 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 MTMR9Q96QG7 549 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 CENPHQ9H3R5 247 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 POLD4Q9HCU8 107 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 IL17RBQ9NRM6 502 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 BZW2Q9Y6E2 419 aaKnown RBP10.39□□□□□ -0.75
HDAC3-205ENST00000469550 COL11A1P12107 1806 aaPredicted RBP10.38□□□□□ -0.75
HDAC3-205ENST00000469550 A0A1B0GUA9 196 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 PGRMC1O00264 195 aaKnown RBP10.38□□□□□ -0.75
HDAC3-205ENST00000469550 KCNK3O14649 394 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 SART1O43290 800 aaKnown RBP10.38□□□□□ -0.75
HDAC3-205ENST00000469550 CYTH3O43739 400 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 CCNT1O60563 726 aaKnown RBP10.38□□□□□ -0.75
HDAC3-205ENST00000469550 SMARCA1P28370 1054 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 SLC8A3P57103 927 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 TFAP4Q01664 338 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 ATP2B2Q01814 1243 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 EVX2Q03828 476 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 KLHL30Q0D2K2 578 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 SLC35G1Q2M3R5 365 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 ODF2Q5BJF6 829 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 ERMARDQ5T6L9 678 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 HEATR3Q7Z4Q2 680 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 LRRC57Q8N9N7 239 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 CCDC26Q8TAB7 109 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 CCDC17Q96LX7 622 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 PNMA5Q96PV4 448 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.38□□□□□ -0.752e-12■■■□□ 19.1
HDAC3-205ENST00000469550 SPZ1Q9BXG8 430 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 MOV10L1Q9BXT6 1211 aaKnown RBP10.38□□□□□ -0.75
HDAC3-205ENST00000469550 TANGO6Q9C0B7 1094 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 SPATC1LQ9H0A9 340 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 C6orf50Q9HD87 102 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 NLRC4Q9NPP4 1024 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 FAM114A2Q9NRY5 505 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 HAUS2Q9NVX0 235 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 FBXL5Q9UKA1 691 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 TMX2Q9Y320 296 aa10.38□□□□□ -0.75
HDAC3-205ENST00000469550 BAZ2BQ9UIF8 2168 aaKnown RBP10.38□□□□□ -0.75
HDAC3-205ENST00000469550 ESYT2A0FGR8 921 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 CCT8L1PA6NM43 557 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 ASAP2O43150 1006 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 SYN1P17600 705 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 TMOD1P28289 359 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 ITIH4Q14624 930 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 ASIC2Q16515 512 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 SPRED3Q2MJR0 410 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 LETM2Q2VYF4 491 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 TMC3Q7Z5M5 1100 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 CPLX4Q7Z7G2 160 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 SLFN11Q7Z7L1 901 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 SIAH1Q8IUQ4 282 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 TRIM59Q8IWR1 403 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 MYOCDQ8IZQ8 938 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 TRPV1Q8NER1 839 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 LMBR1Q8WVP7 490 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 RAD54LQ92698 747 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 HVCN1Q96D96 273 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 CHMP6Q96FZ7 201 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 LSM14BQ9BX40 385 aaKnown RBP10.37□□□□□ -0.75
HDAC3-205ENST00000469550 RAB34Q9BZG1 259 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 MROH8Q9H579 483 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 ARHGEF10LQ9HCE6 1279 aa10.37□□□□□ -0.75
HDAC3-205ENST00000469550 CNOT8Q9UFF9 292 aaKnown RBP10.37□□□□□ -0.75
HDAC3-205ENST00000469550 NOVA2Q9UNW9 492 aaKnown RBP10.37□□□□□ -0.75
HDAC3-205ENST00000469550 ZNFX1Q9P2E3 1918 aaKnown RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms