RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 A0A1B0GUA9 196 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 FRMD3A2A2Y4 597 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 H0YCG3 227 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 B4GALT5O43286 388 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 UPP2O95045 317 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 STAG3L1P0CL83 205 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 IDEP14735 1019 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 GAP43P17677 238 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 ARF4P18085 180 aaPredicted RBP13.16□□□□□ -0.3
VPS13D-204ENST00000469054 LIG1P18858 919 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 AFMP43652 599 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 RABGGTBP53611 331 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 NCKAP1LP55160 1127 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 FAM117BQ6P1L5 589 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 CNNM4Q6P4Q7 775 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 NOTUMQ6P988 496 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 KRBA2Q6ZNG9 492 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 NPAS4Q8IUM7 802 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 FAM178BQ8IXR5 827 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 CCDC65Q8IXS2 484 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 CRIPAKQ8N1N5 446 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 SLC17A8Q8NDX2 589 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 CCDC51Q96ER9 411 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 CPB2Q96IY4 423 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 FIZ1Q96SL8 496 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 ZBED2Q9BTP6 218 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 PBX4Q9BYU1 374 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 ELAC1Q9H777 363 aaKnown RBP13.16□□□□□ -0.3
VPS13D-204ENST00000469054 PANK4Q9NVE7 773 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 SEL1LQ9UBV2 794 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 LRFN2Q9ULH4 789 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 PCDHB7Q9Y5E2 793 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 RANBP2P49792 3224 aaKnown RBP13.15□□□□□ -0.3
VPS13D-204ENST00000469054 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.15□□□□□ -0.3
VPS13D-204ENST00000469054 TTLL13PA6NNM8 815 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 SOX1O00570 391 aaPredicted RBP13.15□□□□□ -0.3
VPS13D-204ENST00000469054 TLL1O43897 1013 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 GADD45BO75293 160 aaPredicted RBP13.15□□□□□ -0.3
VPS13D-204ENST00000469054 MAPTP10636 758 aaKnown RBP13.15□□□□□ -0.3
VPS13D-204ENST00000469054 SKIP12755 728 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 IBSPP21815 317 aaPredicted RBP13.15□□□□□ -0.3
VPS13D-204ENST00000469054 SCP2P22307 547 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 PBX2P40425 430 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 ASIC1P78348 528 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 PRPF4BQ13523 1007 aaKnown RBP13.15□□□□□ -0.3
VPS13D-204ENST00000469054 SNW1Q13573 536 aaKnown RBP13.15□□□□□ -0.3
VPS13D-204ENST00000469054 CUL4BQ13620 913 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 RAB30Q15771 203 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 HERC4Q5GLZ8 1057 aaPredicted RBP13.15□□□□□ -0.3
VPS13D-204ENST00000469054 NT5DC1Q5TFE4 455 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 TAS1R3Q7RTX0 852 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 HAUS6Q7Z4H7 955 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 SFR1Q86XK3 245 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 ECHDC2Q86YB7 292 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 GRAMD1CQ8IYS0 662 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 FMR1NBQ8N0W7 255 aaPredicted RBP13.15□□□□□ -0.3
VPS13D-204ENST00000469054 CNNM3Q8NE01 707 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 ENGASEQ8NFI3 743 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 RAD9AQ99638 391 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 BLZF1Q9H2G9 400 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 FAM105AQ9NUU6 356 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 TMEM161AQ9NX61 479 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 MSRAQ9UJ68 235 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 USP20Q9Y2K6 914 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 PCDHA11Q9Y5I1 949 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 SIP14410 1827 aa13.15□□□□□ -0.3
VPS13D-204ENST00000469054 CNTNAP2Q9UHC6 1331 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 K7ENM7 598 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 ZNF623O75123 536 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 PRPF40AO75400 957 aaKnown RBP13.14□□□□□ -0.31
VPS13D-204ENST00000469054 DGKIO75912 1065 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 EOMESO95936 686 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 EDN1P05305 212 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 MYL1P05976 194 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 MYOGP15173 224 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 CASP1P29466 404 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 NMT1P30419 496 aaKnown RBP13.14□□□□□ -0.31
VPS13D-204ENST00000469054 ABCD1P33897 745 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 RAB27AP51159 221 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 UBE2HP62256 183 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 HTRA4P83105 476 aaPredicted RBP13.14□□□□□ -0.31
VPS13D-204ENST00000469054 GTF2BQ00403 316 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 FAM160A1Q05DH4 1040 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 STRN3Q13033 797 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 COASYQ13057 564 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 TMEM132AQ24JP5 1023 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 UBXN11Q5T124 520 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 UNC13DQ70J99 1090 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 ZNF720Q7Z2F6 126 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 ZNF598Q86UK7 904 aaKnown RBP13.14□□□□□ -0.31
VPS13D-204ENST00000469054 CDR2LQ86X02 465 aaPredicted RBP13.14□□□□□ -0.31
VPS13D-204ENST00000469054 CCDC34Q96HJ3 373 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 MRPL4Q9BYD3 311 aaKnown RBP13.14□□□□□ -0.31
VPS13D-204ENST00000469054 ST6GALNAC4Q9H4F1 302 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 MRPL44Q9H9J2 332 aaKnown RBP13.14□□□□□ -0.31
VPS13D-204ENST00000469054 OLFML3Q9NRN5 406 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 YBX2Q9Y2T7 364 aaKnown RBP13.14□□□□□ -0.31
VPS13D-204ENST00000469054 INSL6Q9Y581 213 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 PCDHB2Q9Y5E7 798 aa13.14□□□□□ -0.31
VPS13D-204ENST00000469054 PVALEFA0A1B0GWK0 134 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms