RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 RNF149Q8NC42 400 aa23.52■■□□□ 1.36
COL9A3-207ENST00000467819 URGCPQ8TCY9 931 aa23.52■■□□□ 1.36
COL9A3-207ENST00000467819 ADAM7Q9H2U9 754 aa23.52■■□□□ 1.36
COL9A3-207ENST00000467819 POMKQ9H5K3 350 aa23.52■■□□□ 1.36
COL9A3-207ENST00000467819 ZSWIM4Q9H7M6 989 aa23.52■■□□□ 1.36
COL9A3-207ENST00000467819 BRMS1Q9HCU9 246 aa23.52■■□□□ 1.36
COL9A3-207ENST00000467819 CARNS1A5YM72 827 aa23.51■■□□□ 1.35
COL9A3-207ENST00000467819 LARGE1O95461 756 aa23.51■■□□□ 1.35
COL9A3-207ENST00000467819 WEE2P0C1S8 567 aa23.51■■□□□ 1.35
COL9A3-207ENST00000467819 CTSAP10619 480 aa23.51■■□□□ 1.35
COL9A3-207ENST00000467819 FDPSP14324 419 aaKnown RBP23.51■■□□□ 1.35
COL9A3-207ENST00000467819 ANAPC15P60006 121 aa23.51■■□□□ 1.35
COL9A3-207ENST00000467819 ITIH3Q06033 890 aa23.51■■□□□ 1.35
COL9A3-207ENST00000467819 RARS2Q5T160 578 aaKnown RBP23.51■■□□□ 1.35
COL9A3-207ENST00000467819 TPH2Q8IWU9 490 aa23.51■■□□□ 1.35
COL9A3-207ENST00000467819 SUGP1Q8IWZ8 645 aaKnown RBP23.51■■□□□ 1.35
COL9A3-207ENST00000467819 C12orf76Q8N812 135 aaPredicted RBP23.51■■□□□ 1.35
COL9A3-207ENST00000467819 TCP11Q8WWU5 503 aa23.51■■□□□ 1.35
COL9A3-207ENST00000467819 MTRQ99707 1265 aa23.51■■□□□ 1.35
COL9A3-207ENST00000467819 RSAD1Q9HA92 442 aa23.51■■□□□ 1.35
COL9A3-207ENST00000467819 NR2E1Q9Y466 385 aa23.51■■□□□ 1.35
COL9A3-207ENST00000467819 DENND4AQ7Z401 1863 aa23.5■■□□□ 1.35
COL9A3-207ENST00000467819 GAS2O43903 313 aaKnown RBP23.5■■□□□ 1.35
COL9A3-207ENST00000467819 EPCAMP16422 314 aa23.5■■□□□ 1.35
COL9A3-207ENST00000467819 AFF1P51825 1210 aaKnown RBP23.5■■□□□ 1.35
COL9A3-207ENST00000467819 FOSBP53539 338 aa23.5■■□□□ 1.35
COL9A3-207ENST00000467819 UBXN11Q5T124 520 aa23.5■■□□□ 1.35
COL9A3-207ENST00000467819 FERMT3Q86UX7 667 aa23.5■■□□□ 1.35
COL9A3-207ENST00000467819 VN1R3Q9BXE9 311 aa23.5■■□□□ 1.35
COL9A3-207ENST00000467819 C2orf16Q68DN1 1984 aa23.49■■□□□ 1.35
COL9A3-207ENST00000467819 ASAP2O43150 1006 aa23.49■■□□□ 1.35
COL9A3-207ENST00000467819 DDHD2O94830 711 aa23.49■■□□□ 1.35
COL9A3-207ENST00000467819 ERLIN2O94905 339 aa23.49■■□□□ 1.35
COL9A3-207ENST00000467819 HOXA11P31270 313 aaPredicted RBP23.49■■□□□ 1.35
COL9A3-207ENST00000467819 ME3Q16798 604 aa23.49■■□□□ 1.35
COL9A3-207ENST00000467819 KANK3Q6NY19 840 aa23.49■■□□□ 1.35
COL9A3-207ENST00000467819 MRPL10Q7Z7H8 261 aaKnown RBP23.49■■□□□ 1.35
COL9A3-207ENST00000467819 FBXL6Q8N531 539 aa23.49■■□□□ 1.35
COL9A3-207ENST00000467819 TNFRSF25Q93038 417 aa23.49■■□□□ 1.35
COL9A3-207ENST00000467819 NECTIN4Q96NY8 510 aa23.49■■□□□ 1.35
COL9A3-207ENST00000467819 FAM193BQ96PV7 902 aaPredicted RBP23.49■■□□□ 1.35
COL9A3-207ENST00000467819 EIF2AK1Q9BQI3 630 aaKnown RBP23.49■■□□□ 1.35
COL9A3-207ENST00000467819 DZANK1Q9NVP4 752 aa23.49■■□□□ 1.35
COL9A3-207ENST00000467819 IRAK3Q9Y616 596 aa23.49■■□□□ 1.35
COL9A3-207ENST00000467819 C2CD4DB7Z1M9 353 aa23.48■■□□□ 1.35
COL9A3-207ENST00000467819 POMCP01189 267 aa23.48■■□□□ 1.35
COL9A3-207ENST00000467819 SSBP05455 408 aaKnown RBP eCLIP23.48■■□□□ 1.35
COL9A3-207ENST00000467819 MTHFRP42898 656 aa23.48■■□□□ 1.35
COL9A3-207ENST00000467819 MRE11P49959 708 aa23.48■■□□□ 1.35
COL9A3-207ENST00000467819 GIT2Q14161 759 aa23.48■■□□□ 1.35
COL9A3-207ENST00000467819 CALCRLQ16602 461 aa23.48■■□□□ 1.35
COL9A3-207ENST00000467819 IER5LQ5T953 404 aa23.48■■□□□ 1.35
COL9A3-207ENST00000467819 PRSS33Q8NF86 280 aa23.48■■□□□ 1.35
COL9A3-207ENST00000467819 GTF3C6Q969F1 213 aa23.48■■□□□ 1.35
COL9A3-207ENST00000467819 ASIC4Q96FT7 647 aa23.48■■□□□ 1.35
COL9A3-207ENST00000467819 RIPOR3Q96MK2 946 aa23.48■■□□□ 1.35
COL9A3-207ENST00000467819 XPNPEP1Q9NQW7 623 aa23.48■■□□□ 1.35
COL9A3-207ENST00000467819 CNTNAP2Q9UHC6 1331 aa23.48■■□□□ 1.35
COL9A3-207ENST00000467819 SLITRK3O94933 977 aa23.47■■□□□ 1.35
COL9A3-207ENST00000467819 PTPN14Q15678 1187 aa23.47■■□□□ 1.35
COL9A3-207ENST00000467819 NSUN7Q8NE18 718 aaKnown RBP23.47■■□□□ 1.35
COL9A3-207ENST00000467819 SLC22A17Q8WUG5 538 aa23.47■■□□□ 1.35
COL9A3-207ENST00000467819 PCDHA12Q9UN75 941 aa23.47■■□□□ 1.35
COL9A3-207ENST00000467819 FAN1Q9Y2M0 1017 aa23.47■■□□□ 1.35
COL9A3-207ENST00000467819 PLXNA3P51805 1871 aa23.47■■□□□ 1.35
COL9A3-207ENST00000467819 ITGA4P13612 1032 aa23.46■■□□□ 1.35
COL9A3-207ENST00000467819 NCLP19338 710 aaKnown RBP23.46■■□□□ 1.35
COL9A3-207ENST00000467819 KREMEN2Q8NCW0 462 aa23.46■■□□□ 1.35
COL9A3-207ENST00000467819 CPB2Q96IY4 423 aa23.46■■□□□ 1.35
COL9A3-207ENST00000467819 CCDC43Q96MW1 224 aaKnown RBP23.46■■□□□ 1.35
COL9A3-207ENST00000467819 EIF2AQ9BY44 585 aaKnown RBP23.46■■□□□ 1.35
COL9A3-207ENST00000467819 KANSL3Q9P2N6 904 aa23.46■■□□□ 1.35
COL9A3-207ENST00000467819 SPDYE4A6NLX3 237 aa23.45■■□□□ 1.34
COL9A3-207ENST00000467819 BTBD18B2RXH4 712 aa23.45■■□□□ 1.34
COL9A3-207ENST00000467819 INO80B-WBP1J3KQ70 363 aa23.45■■□□□ 1.34
COL9A3-207ENST00000467819 WNT7AO00755 349 aa23.45■■□□□ 1.34
COL9A3-207ENST00000467819 NRP1O14786 923 aa23.45■■□□□ 1.34
COL9A3-207ENST00000467819 TSPAN1O60635 241 aa23.45■■□□□ 1.34
COL9A3-207ENST00000467819 JAK2O60674 1132 aa23.45■■□□□ 1.34
COL9A3-207ENST00000467819 ALDH2P05091 517 aa23.45■■□□□ 1.34
COL9A3-207ENST00000467819 PTENP60484 403 aa23.45■■□□□ 1.34
COL9A3-207ENST00000467819 MXD4Q14582 209 aaPredicted RBP23.45■■□□□ 1.34
COL9A3-207ENST00000467819 KIAA1841Q6NSI8 718 aa23.45■■□□□ 1.34
COL9A3-207ENST00000467819 CABP7Q86V35 215 aa23.45■■□□□ 1.34
COL9A3-207ENST00000467819 DIS3L2Q8IYB7 885 aaKnown RBP23.45■■□□□ 1.34
COL9A3-207ENST00000467819 SMG8Q8ND04 991 aaKnown RBP23.45■■□□□ 1.34
COL9A3-207ENST00000467819 FEZF2Q8TBJ5 459 aa23.45■■□□□ 1.34
COL9A3-207ENST00000467819 ASAP3Q8TDY4 903 aa23.45■■□□□ 1.34
COL9A3-207ENST00000467819 TMEM175Q9BSA9 504 aa23.45■■□□□ 1.34
COL9A3-207ENST00000467819 TTC12Q9H892 705 aaPredicted RBP23.45■■□□□ 1.34
COL9A3-207ENST00000467819 DBR1Q9UK59 544 aaKnown RBP23.45■■□□□ 1.34
COL9A3-207ENST00000467819 IPPQ9Y573 584 aa23.45■■□□□ 1.34
COL9A3-207ENST00000467819 NEMFO60524 1076 aa23.44■■□□□ 1.34
COL9A3-207ENST00000467819 KLRC2P26717 231 aa23.44■■□□□ 1.34
COL9A3-207ENST00000467819 TXKP42681 527 aa23.44■■□□□ 1.34
COL9A3-207ENST00000467819 VCPP55072 806 aaKnown RBP23.44■■□□□ 1.34
COL9A3-207ENST00000467819 CAPSQ13938 189 aa23.44■■□□□ 1.34
COL9A3-207ENST00000467819 TRIM29Q14134 588 aa23.44■■□□□ 1.34
COL9A3-207ENST00000467819 TFDP1Q14186 410 aa23.44■■□□□ 1.34
COL9A3-207ENST00000467819 ATAT1Q5SQI0 421 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms