RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 TFDP1Q14186 410 aa17.17■□□□□ 0.34
SKA3-204ENST00000462482 EMC2Q15006 297 aa17.17■□□□□ 0.34
SKA3-204ENST00000462482 PCBP1Q15365 356 aaKnown RBP eCLIP17.17■□□□□ 0.34
SKA3-204ENST00000462482 MRPL10Q7Z7H8 261 aaKnown RBP17.17■□□□□ 0.34
SKA3-204ENST00000462482 TPH2Q8IWU9 490 aa17.17■□□□□ 0.34
SKA3-204ENST00000462482 PLCD3Q8N3E9 789 aa17.17■□□□□ 0.34
SKA3-204ENST00000462482 RNF149Q8NC42 400 aa17.17■□□□□ 0.34
SKA3-204ENST00000462482 MTRQ99707 1265 aa17.17■□□□□ 0.34
SKA3-204ENST00000462482 TMEM175Q9BSA9 504 aa17.17■□□□□ 0.34
SKA3-204ENST00000462482 BMP2KQ9NSY1 1161 aaPredicted RBP17.17■□□□□ 0.34
SKA3-204ENST00000462482 FAN1Q9Y2M0 1017 aa17.17■□□□□ 0.34
SKA3-204ENST00000462482 FNDC1Q4ZHG4 1894 aaPredicted RBP17.16■□□□□ 0.34
SKA3-204ENST00000462482 PLXNA4Q9HCM2 1894 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 C2CD4DB7Z1M9 353 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 ITGA4P13612 1032 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 EPCAMP16422 314 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 KLRC2P26717 231 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 AXLP30530 894 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 CYP4A11Q02928 519 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 MXD4Q14582 209 aaPredicted RBP17.16■□□□□ 0.34
SKA3-204ENST00000462482 KIAA1841Q6NSI8 718 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 FERMT3Q86UX7 667 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 TMEM173Q86WV6 379 aaPredicted RBP17.16■□□□□ 0.34
SKA3-204ENST00000462482 POTEDQ86YR6 584 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 HACE1Q8IYU2 909 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 C12orf76Q8N812 135 aaPredicted RBP17.16■□□□□ 0.34
SKA3-204ENST00000462482 ZNF579Q8NAF0 562 aaKnown RBP17.16■□□□□ 0.34
SKA3-204ENST00000462482 PRSS33Q8NF86 280 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 ACSF2Q96CM8 615 aaPredicted RBP17.16■□□□□ 0.34
SKA3-204ENST00000462482 ASIC4Q96FT7 647 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 DYDC2Q96IM9 177 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 SFXN1Q9H9B4 322 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 MRPL17Q9NRX2 175 aaKnown RBP17.16■□□□□ 0.34
SKA3-204ENST00000462482 RGL1Q9NZL6 768 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 DNAJB4Q9UDY4 337 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 SSX2IPQ9Y2D8 614 aa17.16■□□□□ 0.34
SKA3-204ENST00000462482 ATG2AQ2TAZ0 1938 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 PIEZO1Q92508 2521 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 MEIS3P2A8K0S8 358 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 POMCP01189 267 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 SSBP05455 408 aaKnown RBP eCLIP17.15■□□□□ 0.34
SKA3-204ENST00000462482 NCLP19338 710 aaKnown RBP17.15■□□□□ 0.34
SKA3-204ENST00000462482 AVPR2P30518 371 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 TRIM29Q14134 588 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 CTTNQ14247 550 aaKnown RBP17.15■□□□□ 0.34
SKA3-204ENST00000462482 PTPN14Q15678 1187 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 IER5LQ5T953 404 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 NOTUMQ6P988 496 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 AGMOQ6ZNB7 445 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 ZNF280BQ86YH2 543 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 OXER1Q8TDS5 423 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 HAS1Q92839 578 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 CCDC51Q96ER9 411 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 TRIM6Q9C030 488 aaPredicted RBP17.15■□□□□ 0.34
SKA3-204ENST00000462482 DPP7Q9UHL4 492 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 CDH22Q9UJ99 828 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 TPCN1Q9ULQ1 816 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 USTQ9Y2C2 406 aa17.15■□□□□ 0.34
SKA3-204ENST00000462482 INO80B-WBP1J3KQ70 363 aa17.14■□□□□ 0.33
SKA3-204ENST00000462482 URODP06132 367 aa17.14■□□□□ 0.33
SKA3-204ENST00000462482 WEE2P0C1S8 567 aa17.14■□□□□ 0.33
SKA3-204ENST00000462482 NUBP1P53384 320 aa17.14■□□□□ 0.33
SKA3-204ENST00000462482 ANAPC15P60006 121 aa17.14■□□□□ 0.33
SKA3-204ENST00000462482 TMC5Q6UXY8 1006 aa17.14■□□□□ 0.33
SKA3-204ENST00000462482 ZDHHC14Q8IZN3 488 aa17.14■□□□□ 0.33
SKA3-204ENST00000462482 SLC22A17Q8WUG5 538 aa17.14■□□□□ 0.33
SKA3-204ENST00000462482 BCL7CQ8WUZ0 217 aaPredicted RBP17.14■□□□□ 0.33
SKA3-204ENST00000462482 MINDY3Q9H8M7 445 aa17.14■□□□□ 0.33
SKA3-204ENST00000462482 WRAP73Q9P2S5 460 aaPredicted RBP17.14■□□□□ 0.33
SKA3-204ENST00000462482 PCDHA12Q9UN75 941 aa17.14■□□□□ 0.33
SKA3-204ENST00000462482 EVPLQ92817 2033 aa17.14■□□□□ 0.33
SKA3-204ENST00000462482 LOXHD1Q8IVV2 1947 aa17.13■□□□□ 0.33
SKA3-204ENST00000462482 MYH9P35579 1960 aaKnown RBP17.13■□□□□ 0.33
SKA3-204ENST00000462482 NRP1O14786 923 aa17.13■□□□□ 0.33
SKA3-204ENST00000462482 EIF5BO60841 1220 aaKnown RBP17.13■□□□□ 0.33
SKA3-204ENST00000462482 DGAT1O75907 488 aa17.13■□□□□ 0.33
SKA3-204ENST00000462482 DDHD2O94830 711 aa17.13■□□□□ 0.33
SKA3-204ENST00000462482 HOXA11P31270 313 aaPredicted RBP17.13■□□□□ 0.33
SKA3-204ENST00000462482 OR1G1P47890 313 aa17.13■□□□□ 0.33
SKA3-204ENST00000462482 CALCRLQ16602 461 aa17.13■□□□□ 0.33
SKA3-204ENST00000462482 CCDC149Q6ZUS6 474 aa17.13■□□□□ 0.33
SKA3-204ENST00000462482 OTOP3Q7RTS5 596 aa17.13■□□□□ 0.33
SKA3-204ENST00000462482 KLHL5Q96PQ7 755 aa17.13■□□□□ 0.33
SKA3-204ENST00000462482 MFSD1Q9H3U5 465 aa17.13■□□□□ 0.33
SKA3-204ENST00000462482 GJB4Q9NTQ9 266 aa17.13■□□□□ 0.33
SKA3-204ENST00000462482 LIMD1Q9UGP4 676 aa17.13■□□□□ 0.33
SKA3-204ENST00000462482 PRG3Q9Y2Y8 225 aaPredicted RBP17.13■□□□□ 0.33
SKA3-204ENST00000462482 ADH1AP07327 375 aa17.12■□□□□ 0.33
SKA3-204ENST00000462482 AK2P54819 239 aa17.12■□□□□ 0.33
SKA3-204ENST00000462482 VCPP55072 806 aaKnown RBP17.12■□□□□ 0.33
SKA3-204ENST00000462482 PTENP60484 403 aa17.12■□□□□ 0.33
SKA3-204ENST00000462482 NR5A1Q13285 461 aa17.12■□□□□ 0.33
SKA3-204ENST00000462482 UBXN11Q5T124 520 aa17.12■□□□□ 0.33
SKA3-204ENST00000462482 GPR149Q86SP6 731 aa17.12■□□□□ 0.33
SKA3-204ENST00000462482 ATOH1Q92858 354 aaPredicted RBP17.12■□□□□ 0.33
SKA3-204ENST00000462482 EIF2AK1Q9BQI3 630 aaKnown RBP17.12■□□□□ 0.33
SKA3-204ENST00000462482 CSRNP2Q9H175 543 aa17.12■□□□□ 0.33
SKA3-204ENST00000462482 ANKEF1Q9NU02 776 aa17.12■□□□□ 0.33
SKA3-204ENST00000462482 IPPQ9Y573 584 aa17.12■□□□□ 0.33
SKA3-204ENST00000462482 C2CD2LO14523 706 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms