RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 CYP4A11Q02928 519 aa17.99■□□□□ 0.47
COL7A1-204ENST00000462475 CTTNQ14247 550 aaKnown RBP17.99■□□□□ 0.47
COL7A1-204ENST00000462475 EMC2Q15006 297 aa17.99■□□□□ 0.47
COL7A1-204ENST00000462475 PTPN14Q15678 1187 aa17.99■□□□□ 0.47
COL7A1-204ENST00000462475 SRGAP1Q7Z6B7 1085 aa17.99■□□□□ 0.47
COL7A1-204ENST00000462475 MRPL10Q7Z7H8 261 aaKnown RBP17.99■□□□□ 0.47
COL7A1-204ENST00000462475 URGCPQ8TCY9 931 aa17.99■□□□□ 0.47
COL7A1-204ENST00000462475 PGBD4Q96DM1 585 aa17.99■□□□□ 0.47
COL7A1-204ENST00000462475 DYDC2Q96IM9 177 aa17.99■□□□□ 0.47
COL7A1-204ENST00000462475 RSAD1Q9HA92 442 aa17.99■□□□□ 0.47
COL7A1-204ENST00000462475 DZANK1Q9NVP4 752 aa17.99■□□□□ 0.47
COL7A1-204ENST00000462475 USP34Q70CQ2 3546 aa17.98■□□□□ 0.47
COL7A1-204ENST00000462475 CARNS1A5YM72 827 aa17.98■□□□□ 0.47
COL7A1-204ENST00000462475 MARCH6O60337 910 aa17.98■□□□□ 0.47
COL7A1-204ENST00000462475 DDHD2O94830 711 aa17.98■□□□□ 0.47
COL7A1-204ENST00000462475 PDGFBP01127 241 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-204ENST00000462475 MTHFRP42898 656 aa17.98■□□□□ 0.47
COL7A1-204ENST00000462475 NR5A1Q13285 461 aa17.98■□□□□ 0.47
COL7A1-204ENST00000462475 XKR9Q5GH70 373 aa17.98■□□□□ 0.47
COL7A1-204ENST00000462475 KIAA1841Q6NSI8 718 aa17.98■□□□□ 0.47
COL7A1-204ENST00000462475 FERMT3Q86UX7 667 aa17.98■□□□□ 0.47
COL7A1-204ENST00000462475 TMEM87AQ8NBN3 555 aa17.98■□□□□ 0.47
COL7A1-204ENST00000462475 RNF149Q8NC42 400 aa17.98■□□□□ 0.47
COL7A1-204ENST00000462475 KREMEN2Q8NCW0 462 aa17.98■□□□□ 0.47
COL7A1-204ENST00000462475 SLC22A17Q8WUG5 538 aa17.98■□□□□ 0.47
COL7A1-204ENST00000462475 NAP1L4Q99733 375 aaKnown RBP17.98■□□□□ 0.47
COL7A1-204ENST00000462475 ORC3Q9UBD5 711 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-204ENST00000462475 KMT2EQ8IZD2 1858 aa17.97■□□□□ 0.47
COL7A1-204ENST00000462475 POMCP01189 267 aa17.97■□□□□ 0.47
COL7A1-204ENST00000462475 AK2P54819 239 aa17.97■□□□□ 0.47
COL7A1-204ENST00000462475 PTPN5P54829 565 aa17.97■□□□□ 0.47
COL7A1-204ENST00000462475 TCF15Q12870 199 aa17.97■□□□□ 0.47
COL7A1-204ENST00000462475 GIT2Q14161 759 aa17.97■□□□□ 0.47
COL7A1-204ENST00000462475 EXOC8Q8IYI6 725 aa17.97■□□□□ 0.47
COL7A1-204ENST00000462475 TNFRSF25Q93038 417 aa17.97■□□□□ 0.47
COL7A1-204ENST00000462475 RIPOR3Q96MK2 946 aa17.97■□□□□ 0.47
COL7A1-204ENST00000462475 SMOC2Q9H3U7 446 aa17.97■□□□□ 0.47
COL7A1-204ENST00000462475 ZSWIM4Q9H7M6 989 aa17.97■□□□□ 0.47
COL7A1-204ENST00000462475 XPNPEP1Q9NQW7 623 aa17.97■□□□□ 0.47
COL7A1-204ENST00000462475 CNTNAP2Q9UHC6 1331 aa17.97■□□□□ 0.47
COL7A1-204ENST00000462475 GAS2O43903 313 aaKnown RBP17.96■□□□□ 0.47
COL7A1-204ENST00000462475 BRD1O95696 1058 aa17.96■□□□□ 0.47
COL7A1-204ENST00000462475 SSBP05455 408 aaKnown RBP eCLIP17.96■□□□□ 0.47
COL7A1-204ENST00000462475 FDPSP14324 419 aaKnown RBP17.96■□□□□ 0.47
COL7A1-204ENST00000462475 KRT2P35908 639 aa17.96■□□□□ 0.47
COL7A1-204ENST00000462475 TMC5Q6UXY8 1006 aa17.96■□□□□ 0.47
COL7A1-204ENST00000462475 OTUD6AQ7L8S5 288 aa17.96■□□□□ 0.47
COL7A1-204ENST00000462475 SLFN12Q8IYM2 578 aa17.96■□□□□ 0.47
COL7A1-204ENST00000462475 NECAB1Q8N987 351 aa17.96■□□□□ 0.47
COL7A1-204ENST00000462475 SMG8Q8ND04 991 aaKnown RBP17.96■□□□□ 0.47
COL7A1-204ENST00000462475 TCP11Q8WWU5 503 aa17.96■□□□□ 0.47
COL7A1-204ENST00000462475 MTRQ99707 1265 aa17.96■□□□□ 0.47
COL7A1-204ENST00000462475 SORCS3Q9UPU3 1222 aa17.96■□□□□ 0.47
COL7A1-204ENST00000462475 TSPAN1O60635 241 aa17.95■□□□□ 0.46
COL7A1-204ENST00000462475 SLITRK3O94933 977 aa17.95■□□□□ 0.46
COL7A1-204ENST00000462475 LARGE1O95461 756 aa17.95■□□□□ 0.46
COL7A1-204ENST00000462475 ASGR2P07307 311 aa17.95■□□□□ 0.46
COL7A1-204ENST00000462475 NCLP19338 710 aaKnown RBP17.95■□□□□ 0.46
COL7A1-204ENST00000462475 AVPR2P30518 371 aa17.95■□□□□ 0.46
COL7A1-204ENST00000462475 MTMR3Q13615 1198 aa17.95■□□□□ 0.46
COL7A1-204ENST00000462475 ATAT1Q5SQI0 421 aa17.95■□□□□ 0.46
COL7A1-204ENST00000462475 CABP7Q86V35 215 aa17.95■□□□□ 0.46
COL7A1-204ENST00000462475 TPH2Q8IWU9 490 aa17.95■□□□□ 0.46
COL7A1-204ENST00000462475 TDRD5Q8NAT2 981 aaKnown RBP17.95■□□□□ 0.46
COL7A1-204ENST00000462475 PRRX2Q99811 253 aa17.95■□□□□ 0.46
COL7A1-204ENST00000462475 EIF2AK1Q9BQI3 630 aaKnown RBP17.95■□□□□ 0.46
COL7A1-204ENST00000462475 TMEM175Q9BSA9 504 aa17.95■□□□□ 0.46
COL7A1-204ENST00000462475 EIF2AQ9BY44 585 aaKnown RBP17.95■□□□□ 0.46
COL7A1-204ENST00000462475 DBR1Q9UK59 544 aaKnown RBP17.95■□□□□ 0.46
COL7A1-204ENST00000462475 IPPQ9Y573 584 aa17.95■□□□□ 0.46
COL7A1-204ENST00000462475 ARID2Q68CP9 1835 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 MYO15AQ9UKN7 3530 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 WNT7AO00755 349 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 NRP1O14786 923 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 ASAP2O43150 1006 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 ERLIN2O94905 339 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 BAG4O95429 457 aaKnown RBP17.94■□□□□ 0.46
COL7A1-204ENST00000462475 CNPP09543 421 aaKnown RBP17.94■□□□□ 0.46
COL7A1-204ENST00000462475 PTENP60484 403 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 UBALD2Q8IYN6 164 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 ASAP3Q8TDY4 903 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 WASF1Q92558 559 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 CPB2Q96IY4 423 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 KLHL5Q96PQ7 755 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 FAM193BQ96PV7 902 aaPredicted RBP17.94■□□□□ 0.46
COL7A1-204ENST00000462475 RNF39Q9H2S5 420 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 SFXN1Q9H9B4 322 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 MARCH5Q9NX47 278 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 KANSL3Q9P2N6 904 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 FAN1Q9Y2M0 1017 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 PRG3Q9Y2Y8 225 aaPredicted RBP17.94■□□□□ 0.46
COL7A1-204ENST00000462475 HES2Q9Y543 173 aa17.94■□□□□ 0.46
COL7A1-204ENST00000462475 LILRB3O75022 631 aa17.93■□□□□ 0.46
COL7A1-204ENST00000462475 ITGA4P13612 1032 aa17.93■□□□□ 0.46
COL7A1-204ENST00000462475 MLH1P40692 756 aa17.93■□□□□ 0.46
COL7A1-204ENST00000462475 CLCN4P51793 760 aa17.93■□□□□ 0.46
COL7A1-204ENST00000462475 FOSBP53539 338 aa17.93■□□□□ 0.46
COL7A1-204ENST00000462475 ANAPC15P60006 121 aa17.93■□□□□ 0.46
COL7A1-204ENST00000462475 CAPSQ13938 189 aa17.93■□□□□ 0.46
COL7A1-204ENST00000462475 ME3Q16798 604 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms