RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 LPAR1Q92633 364 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 G6PC3Q9BUM1 346 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 DCTPP1Q9H773 170 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 SH2D4AQ9H788 454 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 ECHDC1Q9NTX5 307 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 HOXC10Q9NYD6 342 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 ZNF281Q9Y2X9 895 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 PLXNB2O15031 1838 aa8.68□□□□□ -1.02
USP54-208ENST00000461520 SLC15A5A6NIM6 579 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 PSPNO60542 156 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 HOXC6P09630 235 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 CYP2D6P10635 497 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 MFAP1P55081 439 aaKnown RBP8.67□□□□□ -1.02
USP54-208ENST00000461520 FANCCQ00597 558 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 RAD51AP2Q09MP3 1159 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 DUSP4Q13115 394 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 NR0B2Q15466 257 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 ZNF394Q53GI3 561 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 RNF111Q6ZNA4 994 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 C16orf86Q6ZW13 317 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 C7orf61Q8IZ16 206 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 SLC44A5Q8NCS7 719 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 DYNLL2Q96FJ2 89 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 SLC9A7Q96T83 725 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 PUS7LQ9H0K6 701 aaKnown RBP8.67□□□□□ -1.02
USP54-208ENST00000461520 BTBD7Q9P203 1132 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 GPR160Q9UJ42 338 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 TMX2Q9Y320 296 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 PCDHGB7Q9Y5F8 929 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 SLC4A4Q9Y6R1 1079 aa8.67□□□□□ -1.02
USP54-208ENST00000461520 FAM86C2PA6NEL3 165 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 NFIBO00712 420 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 STRNO43815 780 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 SMARCA5O60264 1052 aaPredicted RBP8.66□□□□□ -1.02
USP54-208ENST00000461520 PRAMEF1O95521 474 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 CHGBP05060 677 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 TMEM253P0C7T8 217 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 AKR1B1P15121 316 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 CFPP27918 469 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 ICA1Q05084 483 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 GRB14Q14449 540 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 CCL14Q16627 93 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 LRRFIP1Q32MZ4 808 aaKnown RBP8.66□□□□□ -1.02
USP54-208ENST00000461520 WDR78Q5VTH9 848 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 MFSD14CQ5VZR4 134 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 CTR9Q6PD62 1173 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 ZPBP2Q6X784 338 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 SIAH1Q8IUQ4 282 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 ZNF655Q8N720 491 aaPredicted RBP8.66□□□□□ -1.02
USP54-208ENST00000461520 MB21D1Q8N884 522 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 ANKS4BQ8N8V4 417 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 KBTBD3Q8NAB2 608 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 SHCBP1Q8NEM2 672 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 GPATCH3Q96I76 525 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 SLC6A18Q96N87 628 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 TANGO6Q9C0B7 1094 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 C11orf49Q9H6J7 331 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 VCPKMTQ9H867 229 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 ARPP21Q9UBL0 812 aaPredicted RBP8.66□□□□□ -1.02
USP54-208ENST00000461520 ZMYM5Q9UJ78 669 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 TCFL5Q9UL49 500 aa8.66□□□□□ -1.02
USP54-208ENST00000461520 ZMYND8Q9ULU4 1186 aaPredicted RBP8.66□□□□□ -1.02
USP54-208ENST00000461520 CYP2D7A0A087X1C5 515 aa8.65□□□□□ -1.02
USP54-208ENST00000461520 SSU72P8A0A1W2PR75 194 aa8.65□□□□□ -1.02
USP54-208ENST00000461520 MEIS3P2A8K0S8 358 aa8.65□□□□□ -1.02
USP54-208ENST00000461520 NOTOA8MTQ0 251 aa8.65□□□□□ -1.02
USP54-208ENST00000461520 WDR46O15213 610 aaKnown RBP8.65□□□□□ -1.02
USP54-208ENST00000461520 MSCO60682 206 aa8.65□□□□□ -1.02
USP54-208ENST00000461520 SYPP08247 313 aa8.65□□□□□ -1.02
USP54-208ENST00000461520 SYN1P17600 705 aa8.65□□□□□ -1.02
USP54-208ENST00000461520 CCND3P30281 292 aaPredicted RBP8.65□□□□□ -1.02
USP54-208ENST00000461520 CCNFP41002 786 aa8.65□□□□□ -1.02
USP54-208ENST00000461520 PCBP3P57721 371 aaKnown RBP8.65□□□□□ -1.02
USP54-208ENST00000461520 CHRNEQ04844 493 aa8.65□□□□□ -1.02
USP54-208ENST00000461520 SBK1Q52WX2 424 aa8.65□□□□□ -1.02
USP54-208ENST00000461520 GIMAP6Q6P9H5 292 aa8.65□□□□□ -1.02
USP54-208ENST00000461520 SPOCD1Q6ZMY3 1216 aa8.65□□□□□ -1.02
USP54-208ENST00000461520 KCNN1Q92952 543 aa8.65□□□□□ -1.02
USP54-208ENST00000461520 STRBPQ96SI9 672 aaKnown RBP8.65□□□□□ -1.02
USP54-208ENST00000461520 GDF15Q99988 308 aa8.65□□□□□ -1.02
USP54-208ENST00000461520 MOV10L1Q9BXT6 1211 aaKnown RBP8.65□□□□□ -1.02
USP54-208ENST00000461520 SPATC1LQ9H0A9 340 aa8.65□□□□□ -1.02
USP54-208ENST00000461520 KANSL2Q9H9L4 492 aa8.65□□□□□ -1.02
USP54-208ENST00000461520 YBX2Q9Y2T7 364 aaKnown RBP8.65□□□□□ -1.02
USP54-208ENST00000461520 TTC41PQ6P2S7 1318 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 TMEM82A0PJX8 343 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 SMIM22K7EJ46 135 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 ETV2O00321 342 aaPredicted RBP8.64□□□□□ -1.03
USP54-208ENST00000461520 MEIS1O00470 390 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 TNFRSF10CO14798 259 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 SIGLEC6O43699 453 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 FLOT1O75955 427 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 EFEMP2O95967 443 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 ZFYP08048 801 aaPredicted RBP8.64□□□□□ -1.03
USP54-208ENST00000461520 COL6A1P12109 1028 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 EEF2P13639 858 aaKnown RBP8.64□□□□□ -1.03
USP54-208ENST00000461520 BMP8BP34820 402 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 KIAA1755Q5JYT7 1200 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 OLFML2BQ68BL8 750 aa8.64□□□□□ -1.03
USP54-208ENST00000461520 ATG14Q6ZNE5 492 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms