RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 FAM187AA6NFU0 413 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 YDJCA8MPS7 323 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 H3BQF6 201 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 CHMP2AO43633 222 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 AGTP01019 485 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 PLA2G4BP0C869 781 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 MSH2P43246 934 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 SPARCL1Q14515 664 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 NSMCE1Q8WV22 266 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 TEKT4Q8WW24 435 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 MAML3Q96JK9 1138 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 CDHR1Q96JP9 859 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 NACC1Q96RE7 527 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 TTC36A6NLP5 189 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 ECEL1O95672 775 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 GJC1P36383 396 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 AARSP49588 968 aaKnown RBP eCLIP6.63□□□□□ -1.35
VPS13D-202ENST00000460333 PLTPP55058 493 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 POLR2FP61218 127 aaKnown RBP6.63□□□□□ -1.35
VPS13D-202ENST00000460333 CAV1Q03135 178 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 C9orf131Q5VYM1 1079 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 ZNF449Q6P9G9 518 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 BTNL9Q6UXG8 535 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 LDHDQ86WU2 507 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 TPH2Q8IWU9 490 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 SPATA4Q8NEY3 305 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 ZNF653Q96CK0 615 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 SNX12Q9UMY4 172 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 NOC2LQ9Y3T9 749 aaKnown RBP6.63□□□□□ -1.35
VPS13D-202ENST00000460333 CASZ1Q86V15 1759 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 BRWD3Q6RI45 1802 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 WNT10BO00744 389 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 N4BP1O75113 896 aaKnown RBP6.63□□□□□ -1.35
VPS13D-202ENST00000460333 MYCLP12524 364 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-202ENST00000460333 HOXA13P31271 388 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-202ENST00000460333 NOVP48745 357 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 CTCFP49711 727 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-202ENST00000460333 MDM2Q00987 491 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-202ENST00000460333 CYLC2Q14093 348 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-202ENST00000460333 DAB2IPQ5VWQ8 1189 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 PDXDC2PQ6P474 469 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 TMEM154Q6P9G4 183 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 PPP4R3CPQ6ZMV5 832 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 SH3RF1Q7Z6J0 888 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 SYT2Q8N9I0 419 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-202ENST00000460333 SLC17A8Q8NDX2 589 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 CEP70Q8NHQ1 597 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 DNAJC9Q8WXX5 260 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 LRRC37BQ96QE4 947 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 WRNIP1Q96S55 665 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 IWS1Q96ST2 819 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 IMPG2Q9BZV3 1241 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 TRIM9Q9C026 710 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 ETNK1Q9HBU6 452 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 SLC39A2Q9NP94 309 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 HOXC10Q9NYD6 342 aa6.63□□□□□ -1.35
VPS13D-202ENST00000460333 COL2A1P02458 1487 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-202ENST00000460333 POTEMA6NI47 508 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 PP2D1A8MPX8 630 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 GYG2O15488 501 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 PLA2G6O60733 806 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 XRCC5P13010 732 aaKnown RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 SNAP25P60880 206 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 SNX1Q13596 522 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 GSPT2Q8IYD1 628 aaKnown RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 SMYD4Q8IYR2 804 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 ZBTB10Q96DT7 871 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 SERPINI1Q99574 410 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 DEFB129Q9H1M3 183 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 FAM96AQ9H5X1 160 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 KBTBD4Q9NVX7 518 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 EPS15L1Q9UBC2 864 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 MAP2K7O14733 419 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 NVLO15381 856 aaKnown RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 SREBF1P36956 1147 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 PRCPP42785 496 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 PCYT1AP49585 367 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 CDR2Q01850 454 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 PPARDQ03181 441 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 KPNB1Q14974 876 aaKnown RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 TRPM8Q7Z2W7 1104 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 DPP9Q86TI2 863 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 SLC51AQ86UW1 340 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 GUF1Q8N442 669 aaKnown RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 RBM46Q8TBY0 533 aaKnown RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 KCNV2Q8TDN2 545 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 USP6NLQ92738 828 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 XPO6Q96QU8 1125 aaKnown RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 EFHD1Q9BUP0 239 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 EDEM3Q9BZQ6 932 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 MRPL44Q9H9J2 332 aaKnown RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 A1CFQ9NQ94 594 aaKnown RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 NDE1Q9NXR1 346 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 USP15Q9Y4E8 981 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 PCDHB13Q9Y5F0 798 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 MAGEA13PA6NCF6 341 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 SRGAP2O75044 1071 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 ATP1A1P05023 1023 aaKnown RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 PMS2P54278 862 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 FKBP3Q00688 224 aaKnown RBP6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms