RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 PCDHGB3Q9Y5G1 929 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 SSU72P8A0A1W2PR75 194 aa12.77□□□□□ -0.36
SYNE2-207ENST00000458046 ZSCAN5CA6NGD5 496 aaPredicted RBP12.77□□□□□ -0.36
SYNE2-207ENST00000458046 AKAP10O43572 662 aa12.77□□□□□ -0.36
SYNE2-207ENST00000458046 SERPING1P05155 500 aa12.77□□□□□ -0.36
SYNE2-207ENST00000458046 KLRC1P26715 233 aa12.77□□□□□ -0.36
SYNE2-207ENST00000458046 ADAM9Q13443 819 aa12.77□□□□□ -0.36
SYNE2-207ENST00000458046 FAM133BQ5BKY9 247 aaKnown RBP12.77□□□□□ -0.36
SYNE2-207ENST00000458046 RTL10Q7L3V2 364 aa12.77□□□□□ -0.36
SYNE2-207ENST00000458046 ZNF572Q7Z3I7 529 aaPredicted RBP12.77□□□□□ -0.36
SYNE2-207ENST00000458046 DNAAF5Q86Y56 855 aa12.77□□□□□ -0.36
SYNE2-207ENST00000458046 SCFD1Q8WVM8 642 aa12.77□□□□□ -0.36
SYNE2-207ENST00000458046 IFT81Q8WYA0 676 aa12.77□□□□□ -0.36
SYNE2-207ENST00000458046 EHD4Q9H223 541 aa12.77□□□□□ -0.36
SYNE2-207ENST00000458046 ITM2BQ9Y287 266 aa12.77□□□□□ -0.36
SYNE2-207ENST00000458046 IKBKGQ9Y6K9 419 aa12.77□□□□□ -0.36
SYNE2-207ENST00000458046 A0A087X0T9 212 aa12.77□□□□□ -0.37
SYNE2-207ENST00000458046 IGKV6D-41A0A0C4DH26 115 aa12.77□□□□□ -0.37
SYNE2-207ENST00000458046 MOXD2PA6NHM9 499 aa12.77□□□□□ -0.37
SYNE2-207ENST00000458046 ZBTB5O15062 677 aa12.77□□□□□ -0.37
SYNE2-207ENST00000458046 FAM228BP0C875 321 aa12.77□□□□□ -0.37
SYNE2-207ENST00000458046 COPAP53621 1224 aa12.77□□□□□ -0.37
SYNE2-207ENST00000458046 ITIH3Q06033 890 aa12.77□□□□□ -0.37
SYNE2-207ENST00000458046 TAF1CQ15572 869 aaPredicted RBP12.77□□□□□ -0.37
SYNE2-207ENST00000458046 CFAP221Q4G0U5 840 aa12.77□□□□□ -0.37
SYNE2-207ENST00000458046 DDX42Q86XP3 938 aaKnown RBP eCLIP12.77□□□□□ -0.37
SYNE2-207ENST00000458046 CCDC65Q8IXS2 484 aa12.77□□□□□ -0.37
SYNE2-207ENST00000458046 ARL10Q8N8L6 244 aa12.77□□□□□ -0.37
SYNE2-207ENST00000458046 EDEM3Q9BZQ6 932 aa12.77□□□□□ -0.37
SYNE2-207ENST00000458046 VPS33BQ9H267 617 aa12.77□□□□□ -0.37
SYNE2-207ENST00000458046 LRRC4BQ9NT99 713 aa12.77□□□□□ -0.37
SYNE2-207ENST00000458046 ATP6V0A2Q9Y487 856 aa12.77□□□□□ -0.37
SYNE2-207ENST00000458046 CNTNAP1P78357 1384 aa12.77□□□□□ -0.37
SYNE2-207ENST00000458046 GLI1P08151 1106 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 ACTN1P12814 892 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 EPS15P42566 896 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 PKN2Q16513 984 aaKnown RBP12.76□□□□□ -0.37
SYNE2-207ENST00000458046 KIAA0753Q2KHM9 967 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 SHROOM1Q2M3G4 852 aaPredicted RBP12.76□□□□□ -0.37
SYNE2-207ENST00000458046 CRY2Q49AN0 593 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 PPP1R15BQ5SWA1 713 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 RNF10Q8N5U6 811 aaKnown RBP12.76□□□□□ -0.37
SYNE2-207ENST00000458046 ZNF232Q9UNY5 417 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 PCDHA2Q9Y5H9 948 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 FAM196BA6NMK8 535 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 MEIS1O00470 390 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 BBOX1O75936 387 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 SHMT1P34896 483 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 CARSP49589 748 aaKnown RBP12.76□□□□□ -0.37
SYNE2-207ENST00000458046 SNAP25P60880 206 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 HTRA3P83110 453 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 KLHL30Q0D2K2 578 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 TRIM59Q8IWR1 403 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 CERS5Q8N5B7 392 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 ARL8AQ96BM9 186 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 NT5C3AQ9H0P0 336 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 TSPYL1Q9H0U9 437 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 PGAP2Q9UHJ9 254 aa12.76□□□□□ -0.37
SYNE2-207ENST00000458046 POTEFA5A3E0 1075 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 MED24O75448 989 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 PGRP06401 933 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 POTEIP0CG38 1075 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 CYP11B2P19099 503 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 HMGB2P26583 209 aaKnown RBP12.75□□□□□ -0.37
SYNE2-207ENST00000458046 IRAK1P51617 712 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 CASP5P51878 434 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 EPHB4P54760 987 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 CLDN10P78369 228 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 GUCY2DQ02846 1103 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 DOK7Q18PE1 504 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.75□□□□□ -0.37
SYNE2-207ENST00000458046 ARSHQ5FYA8 562 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 POTEGQ6S5H5 508 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 POTEEQ6S8J3 1075 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 CAPN12Q6ZSI9 719 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 KCT2Q8NC54 265 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 DEPDC7Q96QD5 511 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 C2orf49Q9BVC5 232 aaPredicted RBP12.75□□□□□ -0.37
SYNE2-207ENST00000458046 EPB41L5Q9HCM4 733 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 UTP6Q9NYH9 597 aaKnown RBP12.75□□□□□ -0.37
SYNE2-207ENST00000458046 NFU1Q9UMS0 254 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 RBAK-RBAKDNI3L0D1 243 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 FAM153BP0C7A2 387 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 PSMC6P62333 389 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 KCNH2Q12809 1159 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 SQSTM1Q13501 440 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 TRADDQ15628 312 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 NAB2Q15742 525 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 SLC18A3Q16572 532 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 KCTD19Q17RG1 926 aaPredicted RBP12.75□□□□□ -0.37
SYNE2-207ENST00000458046 FAM153CQ494X1 144 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 ZFPM1Q8IX07 1006 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 GIMAP1Q8WWP7 306 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 KRT12Q99456 494 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 FAM167BQ9BTA0 163 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 KCTD10Q9H3F6 313 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 FAM153AQ9UHL3 310 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 PCDHA1Q9Y5I3 950 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 SNX5Q9Y5X3 404 aa12.75□□□□□ -0.37
SYNE2-207ENST00000458046 SLC9A1P19634 815 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms