RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 TGFBRAP1Q8WUH2 860 aa5.43□□□□□ -1.54
USP40-209ENST00000452724 RSAD2Q8WXG1 361 aa5.43□□□□□ -1.54
USP40-209ENST00000452724 EXTL1Q92935 676 aa5.43□□□□□ -1.54
USP40-209ENST00000452724 EAF2Q96CJ1 260 aaPredicted RBP5.43□□□□□ -1.54
USP40-209ENST00000452724 ZNF503Q96F45 646 aa5.43□□□□□ -1.54
USP40-209ENST00000452724 HIST1H2AHQ96KK5 128 aa5.43□□□□□ -1.54
USP40-209ENST00000452724 HIST1H2AJQ99878 128 aa5.43□□□□□ -1.54
USP40-209ENST00000452724 CCDC8Q9H0W5 538 aaPredicted RBP5.43□□□□□ -1.54
USP40-209ENST00000452724 TYW1Q9NV66 732 aaKnown RBP5.43□□□□□ -1.54
USP40-209ENST00000452724 POLR3BQ9NW08 1133 aaPredicted RBP5.43□□□□□ -1.54
USP40-209ENST00000452724 DDX56Q9NY93 547 aaKnown RBP5.43□□□□□ -1.54
USP40-209ENST00000452724 TMPRSS11EQ9UL52 423 aa5.43□□□□□ -1.54
USP40-209ENST00000452724 SYNPO2Q9UMS6 1093 aa5.43□□□□□ -1.54
USP40-209ENST00000452724 USP18Q9UMW8 372 aa5.43□□□□□ -1.54
USP40-209ENST00000452724 NPIPB8E9PQR5 432 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 ZNF202O95125 648 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 SLPIP03973 132 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 LPLP06858 475 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 HGFACQ04756 655 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 PPARAQ07869 468 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 FOXL1Q12952 345 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.42□□□□□ -1.54
USP40-209ENST00000452724 LYSMD2Q8IV50 215 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 THEMISQ8N1K5 641 aaPredicted RBP5.42□□□□□ -1.54
USP40-209ENST00000452724 D2HGDHQ8N465 521 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 ZNF808Q8N4W9 903 aaPredicted RBP5.42□□□□□ -1.54
USP40-209ENST00000452724 RABGGTAQ92696 567 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 GCDHQ92947 438 aaPredicted RBP5.42□□□□□ -1.54
USP40-209ENST00000452724 WDR92Q96MX6 357 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 ORAI2Q96SN7 254 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 MPHOSPH9Q99550 1183 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 KCTD10Q9H3F6 313 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 PRDM12Q9H4Q4 367 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 TLR9Q9NR96 1032 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 GIT1Q9Y2X7 761 aa5.42□□□□□ -1.54
USP40-209ENST00000452724 A0A1W2PRX2 142 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 CAPN14A8MX76 684 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 MCM7P33993 719 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 IARSP41252 1262 aaKnown RBP5.41□□□□□ -1.54
USP40-209ENST00000452724 GPR3P46089 330 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 GPR15P49685 360 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 LGALS4P56470 323 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 EXOSC10Q01780 885 aaKnown RBP5.41□□□□□ -1.54
USP40-209ENST00000452724 ADAM15Q13444 863 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 RIN1Q13671 783 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 TRIM25Q14258 630 aaKnown RBP5.41□□□□□ -1.54
USP40-209ENST00000452724 ABCB5Q2M3G0 1257 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 INAVAQ3KP66 663 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 LSM12Q3MHD2 195 aaKnown RBP5.41□□□□□ -1.54
USP40-209ENST00000452724 GPR135Q8IZ08 494 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 CBARPQ8N350 705 aaPredicted RBP5.41□□□□□ -1.54
USP40-209ENST00000452724 OR14C36Q8NHC7 312 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 STAG1Q8WVM7 1258 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 GAB3Q8WWW8 586 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 NKD2Q969F2 451 aaPredicted RBP5.41□□□□□ -1.54
USP40-209ENST00000452724 SLC7A6OSQ96CW6 309 aaPredicted RBP5.41□□□□□ -1.54
USP40-209ENST00000452724 TMEM176AQ96HP8 235 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 RAX2Q96IS3 184 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 ASPSCR1Q9BZE9 553 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 QRSL1Q9H0R6 528 aaKnown RBP5.41□□□□□ -1.54
USP40-209ENST00000452724 PCED1AQ9H1Q7 454 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 CCM2LQ9NUG4 571 aaPredicted RBP5.41□□□□□ -1.54
USP40-209ENST00000452724 PRSS50Q9UI38 385 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 DNAI1Q9UI46 699 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 EDARQ9UNE0 448 aa5.41□□□□□ -1.54
USP40-209ENST00000452724 CTDP1Q9Y5B0 961 aaPredicted RBP5.41□□□□□ -1.54
USP40-209ENST00000452724 A0A0A6YYK5 440 aaPredicted RBP5.4□□□□□ -1.54
USP40-209ENST00000452724 GABRDO14764 452 aa5.4□□□□□ -1.54
USP40-209ENST00000452724 NRP2O60462 931 aa5.4□□□□□ -1.54
USP40-209ENST00000452724 MT-CO1P00395 513 aa5.4□□□□□ -1.54
USP40-209ENST00000452724 PDGFRBP09619 1106 aa5.4□□□□□ -1.54
USP40-209ENST00000452724 XPAP23025 273 aaPredicted RBP5.4□□□□□ -1.54
USP40-209ENST00000452724 MRPS9P82933 396 aaKnown RBP5.4□□□□□ -1.54
USP40-209ENST00000452724 SPIDRQ14159 915 aa5.4□□□□□ -1.54
USP40-209ENST00000452724 CCDC178Q5BJE1 867 aa5.4□□□□□ -1.54
USP40-209ENST00000452724 SLC41A1Q8IVJ1 513 aa5.4□□□□□ -1.54
USP40-209ENST00000452724 AMOTL1Q8IY63 956 aa5.4□□□□□ -1.54
USP40-209ENST00000452724 ANKRD35Q8N283 1001 aa5.4□□□□□ -1.54
USP40-209ENST00000452724 PLEKHG4BQ96PX9 1271 aa5.4□□□□□ -1.54
USP40-209ENST00000452724 SMAD5Q99717 465 aaKnown RBP5.4□□□□□ -1.54
USP40-209ENST00000452724 SOX7Q9BT81 388 aa5.4□□□□□ -1.54
USP40-209ENST00000452724 OSBPL6Q9BZF3 934 aa5.4□□□□□ -1.54
USP40-209ENST00000452724 SLC6A15Q9H2J7 730 aa5.4□□□□□ -1.54
USP40-209ENST00000452724 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.4□□□□□ -1.54
USP40-209ENST00000452724 DNAJC28Q9NX36 388 aa5.4□□□□□ -1.54
USP40-209ENST00000452724 TRIM75PA6NK02 468 aa5.39□□□□□ -1.55
USP40-209ENST00000452724 CFBP00751 764 aa5.39□□□□□ -1.55
USP40-209ENST00000452724 MYBL2P10244 700 aa5.39□□□□□ -1.55
USP40-209ENST00000452724 MTHFD2P13995 350 aa5.39□□□□□ -1.55
USP40-209ENST00000452724 HNRNPLP14866 589 aaKnown RBP eCLIP5.39□□□□□ -1.55
USP40-209ENST00000452724 TGFB2P61812 414 aa5.39□□□□□ -1.55
USP40-209ENST00000452724 SRSF2Q01130 221 aaKnown RBP5.39□□□□□ -1.55
USP40-209ENST00000452724 CRHR2Q13324 411 aa5.39□□□□□ -1.55
USP40-209ENST00000452724 MAN2A1Q16706 1144 aa5.39□□□□□ -1.55
USP40-209ENST00000452724 TOR2AQ5JU69 321 aa5.39□□□□□ -1.55
USP40-209ENST00000452724 GAREM2Q75VX8 874 aa5.39□□□□□ -1.55
USP40-209ENST00000452724 C1orf162Q8NEQ5 155 aaPredicted RBP5.39□□□□□ -1.55
USP40-209ENST00000452724 AUTS2Q8WXX7 1259 aa5.39□□□□□ -1.55
USP40-209ENST00000452724 CEP89Q96ST8 783 aa5.39□□□□□ -1.55
USP40-209ENST00000452724 FDXACB1Q9BRP7 624 aaPredicted RBP5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms