RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SGK1O00141 431 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 RSPH10BP0C881 870 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 PSMA2P25787 234 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 DYNLT1P63172 113 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 LMNB2Q03252 620 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 SNX1Q13596 522 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 MUM1L1Q5H9M0 696 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 ATF7IP2Q5U623 682 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 C11orf70Q9BRQ4 267 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 EDEM3Q9BZQ6 932 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 ANAPC7Q9UJX3 599 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 CAPN11Q9UMQ6 739 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 PPP1R3GB7ZBB8 358 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 IRF6O14896 467 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 ATP2C2O75185 946 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 SOX5P35711 763 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 FMO5P49326 533 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 GPC5P78333 572 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 ZBTB16Q05516 673 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 PPIL2Q13356 520 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 LGSNQ5TDP6 509 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 TTC39CQ8N584 583 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 ZNF560Q96MR9 790 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 TMEM106CQ9BVX2 250 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 TARS2Q9BW92 718 aaKnown RBP7.94□□□□□ -1.14
SYNE1-213ENST00000448038 C17orf75Q9HAS0 396 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 GPRC5CQ9NQ84 441 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 PRMT7Q9NVM4 692 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-213ENST00000448038 GAS2O43903 313 aaKnown RBP7.94□□□□□ -1.14
SYNE1-213ENST00000448038 RPS6KA5O75582 802 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 MAN1A1P33908 653 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 NLRP11P59045 1033 aaKnown RBP7.94□□□□□ -1.14
SYNE1-213ENST00000448038 WDR72Q3MJ13 1102 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 KRT71Q3SY84 523 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 PDXDC1Q6P996 788 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 RNF180Q86T96 592 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 SCN4BQ8IWT1 228 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 CTAGE3PQ8IX95 158 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 RUNDC3BQ96NL0 473 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 PRDM5Q9NQX1 630 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-213ENST00000448038 KBTBD4Q9NVX7 518 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 A8MXQ7 604 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 FAM86B1E9PN63 330 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 M0QYV0 167 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 FAM86B2P0C5J1 330 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 KRT15P19012 456 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 HVCN1Q96D96 273 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 PDGFDQ9GZP0 370 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-213ENST00000448038 RNF14Q9UBS8 474 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 AGAP1Q9UPQ3 857 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 TYW5A2RUC4 315 aaKnown RBP7.94□□□□□ -1.14
SYNE1-213ENST00000448038 STRNO43815 780 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 CATSPERGQ6ZRH7 1159 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 BBOF1Q8ND07 529 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 GLT1D1Q96MS3 346 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 EFCC1Q9HA90 598 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 RGPD5Q99666 1765 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 FTLP02792 175 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-213ENST00000448038 CALB1P05937 261 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 CTNNA1P35221 906 aaKnown RBP7.94□□□□□ -1.14
SYNE1-213ENST00000448038 TATDN1Q6P1N9 297 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 METTL7BQ6UX53 244 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 TAOK1Q7L7X3 1001 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 CCNYQ8ND76 341 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 TBX20Q9UMR3 447 aa7.94□□□□□ -1.14
SYNE1-213ENST00000448038 MCF2LO15068 1137 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 PALMO75781 387 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 ALDH1A1P00352 501 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 ALDH5A1P51649 535 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-213ENST00000448038 SNRPFP62306 86 aaKnown RBP7.93□□□□□ -1.14
SYNE1-213ENST00000448038 ERVK-9P63128 1117 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 ERVK-24P63145 666 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 CNTN2Q02246 1040 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 TMEM132DQ14C87 1099 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 MOB2Q70IA6 237 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 GLYCTKQ8IVS8 523 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 ANKS4BQ8N8V4 417 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 ZC3H15Q8WU90 426 aaKnown RBP7.93□□□□□ -1.14
SYNE1-213ENST00000448038 A1CFQ9NQ94 594 aaKnown RBP7.93□□□□□ -1.14
SYNE1-213ENST00000448038 OGFRQ9NZT2 677 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 APEX2Q9UBZ4 518 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 ZNF541Q9H0D2 1346 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 EIF3CLB5ME19 914 aaKnown RBP7.93□□□□□ -1.14
SYNE1-213ENST00000448038 CYP26A1O43174 497 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 FGRP09769 529 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 TGFB3P10600 412 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 HSPA6P17066 643 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 RWDD2BP57060 319 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 NCOA4Q13772 614 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 RABGGTAQ92696 567 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 EIF3CQ99613 913 aaKnown RBP7.93□□□□□ -1.14
SYNE1-213ENST00000448038 MKNK1Q9BUB5 465 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 WDR18Q9BV38 432 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 ZWILCHQ9H900 591 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 STRIP2Q9ULQ0 834 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 DAAM1Q9Y4D1 1078 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 ACTN1P12814 892 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 ADORA2AP29274 412 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 RBP5P82980 135 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 GIT2Q14161 759 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms