RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 SUCLA2Q9P2R7 463 aaPredicted RBP16.19■□□□□ 0.18
HMGN1-208ENST00000443046 PCDHB2Q9Y5E7 798 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 R4GN57 208 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 NID2Q14112 1375 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 CCDC195A0A1B0GUA6 201 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 NRP1O14786 923 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 TEX28O15482 410 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 GAS7O60861 476 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 C1RP00736 705 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 HOXA11P31270 313 aaPredicted RBP16.18■□□□□ 0.18
HMGN1-208ENST00000443046 NONOQ15233 471 aaKnown RBP eCLIP16.18■□□□□ 0.18
HMGN1-208ENST00000443046 RNF20Q5VTR2 975 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 LRCH2Q5VUJ6 765 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 KIAA0319Q5VV43 1072 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 TAS1R1Q7RTX1 841 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 CATSPER4Q7RTX7 472 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 DGLUCYQ7Z3D6 616 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 KSR1Q8IVT5 923 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 RASEFQ8IZ41 740 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 URGCPQ8TCY9 931 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 GJA10Q969M2 543 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 CCDC136Q96JN2 1154 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 MYADMQ96S97 322 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 SH2D3AQ9BRG2 576 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 HERC2P3Q9BVR0 1158 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 TEKT3Q9BXF9 490 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 TBC1D17Q9HA65 648 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 MARCH5Q9NX47 278 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 DLL3Q9NYJ7 618 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 KANSL3Q9P2N6 904 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 SEPT9Q9UHD8 586 aaPredicted RBP16.18■□□□□ 0.18
HMGN1-208ENST00000443046 FAN1Q9Y2M0 1017 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 CLUHO75153 1309 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 CNTNAP2Q9UHC6 1331 aa16.18■□□□□ 0.18
HMGN1-208ENST00000443046 ZFHX4Q86UP3 3567 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 CCDC196A0A1B0GTZ2 297 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 SPDYE4A6NLX3 237 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 ANHXE9PGG2 379 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 INPPL1O15357 1258 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 CHMP2AO43633 222 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 SP9P0CG40 484 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 GBP2P32456 591 aaPredicted RBP16.17■□□□□ 0.18
HMGN1-208ENST00000443046 PUM1Q14671 1186 aaKnown RBP eCLIP16.17■□□□□ 0.181e-6■□□□□ 9.6
HMGN1-208ENST00000443046 Q4G0T1 1027 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 UBXN11Q5T124 520 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 POTEGQ6S5H5 508 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 ANO5Q75V66 913 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 RHPN2Q8IUC4 686 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 BICD2Q8TD16 824 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 HDAC7Q8WUI4 952 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 STAMQ92783 540 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 RSAD1Q9HA92 442 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 DPP7Q9UHL4 492 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 SSX2IPQ9Y2D8 614 aa16.17■□□□□ 0.18
HMGN1-208ENST00000443046 STK25O00506 426 aa16.16■□□□□ 0.18
HMGN1-208ENST00000443046 RFPL2O75678 378 aa16.16■□□□□ 0.18
HMGN1-208ENST00000443046 ADH1AP07327 375 aa16.16■□□□□ 0.18
HMGN1-208ENST00000443046 MIER3Q7Z3K6 550 aa16.16■□□□□ 0.18
HMGN1-208ENST00000443046 C1orf210Q8IVY1 113 aa16.16■□□□□ 0.18
HMGN1-208ENST00000443046 COLGALT2Q8IYK4 626 aa16.16■□□□□ 0.18
HMGN1-208ENST00000443046 GPR152Q8TDT2 470 aa16.16■□□□□ 0.18
HMGN1-208ENST00000443046 RIN2Q8WYP3 895 aaPredicted RBP16.16■□□□□ 0.18
HMGN1-208ENST00000443046 SLC2A4RGQ9NR83 387 aa16.16■□□□□ 0.18
HMGN1-208ENST00000443046 CA14Q9ULX7 337 aa16.16■□□□□ 0.18
HMGN1-208ENST00000443046 SIT1Q9Y3P8 196 aa16.16■□□□□ 0.18
HMGN1-208ENST00000443046 CYP3A7-CYP3A51PA0A087WV96 503 aa16.15■□□□□ 0.18
HMGN1-208ENST00000443046 ACACBO00763 2458 aa16.15■□□□□ 0.18
HMGN1-208ENST00000443046 C2CD2LO14523 706 aa16.15■□□□□ 0.18
HMGN1-208ENST00000443046 GLUD1P00367 558 aa16.15■□□□□ 0.18
HMGN1-208ENST00000443046 URODP06132 367 aa16.15■□□□□ 0.18
HMGN1-208ENST00000443046 DCNP07585 359 aaKnown RBP16.15■□□□□ 0.18
HMGN1-208ENST00000443046 LAMP2P13473 410 aa16.15■□□□□ 0.18
HMGN1-208ENST00000443046 GLULP15104 373 aa16.15■□□□□ 0.18
HMGN1-208ENST00000443046 NCLP19338 710 aaKnown RBP16.15■□□□□ 0.18
HMGN1-208ENST00000443046 CYP3A7P24462 503 aa16.15■□□□□ 0.18
HMGN1-208ENST00000443046 DSG1Q02413 1049 aa16.15■□□□□ 0.18
HMGN1-208ENST00000443046 DSC1Q08554 894 aa16.15■□□□□ 0.18
HMGN1-208ENST00000443046 NTRK3Q16288 839 aa16.15■□□□□ 0.18
HMGN1-208ENST00000443046 MAML2Q8IZL2 1156 aaPredicted RBP16.15■□□□□ 0.18
HMGN1-208ENST00000443046 SUMF1Q8NBK3 374 aa16.15■□□□□ 0.18
HMGN1-208ENST00000443046 SMG8Q8ND04 991 aaKnown RBP16.15■□□□□ 0.18
HMGN1-208ENST00000443046 RUBCNQ92622 972 aa16.15■□□□□ 0.18
HMGN1-208ENST00000443046 DOCK6Q96HP0 2047 aa16.15■□□□□ 0.18
HMGN1-208ENST00000443046 JPH2Q9BR39 696 aaPredicted RBP16.15■□□□□ 0.18
HMGN1-208ENST00000443046 MINDY3Q9H8M7 445 aa16.15■□□□□ 0.18
HMGN1-208ENST00000443046 CHST7Q9NS84 486 aa16.15■□□□□ 0.18
HMGN1-208ENST00000443046 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.15■□□□□ 0.18
HMGN1-208ENST00000443046 CFAP47Q6ZTR5 3102 aa16.14■□□□□ 0.18
HMGN1-208ENST00000443046 SPTBN2O15020 2390 aa16.14■□□□□ 0.17
HMGN1-208ENST00000443046 DDX11L8A8MPP1 907 aa16.14■□□□□ 0.17
HMGN1-208ENST00000443046 POMCP01189 267 aa16.14■□□□□ 0.17
HMGN1-208ENST00000443046 GLUD2P49448 558 aa16.14■□□□□ 0.17
HMGN1-208ENST00000443046 AK2P54819 239 aa16.14■□□□□ 0.17
HMGN1-208ENST00000443046 STARD6P59095 220 aa16.14■□□□□ 0.17
HMGN1-208ENST00000443046 HTR4Q13639 388 aa16.14■□□□□ 0.17
HMGN1-208ENST00000443046 LILRA6Q6PI73 481 aa16.14■□□□□ 0.17
HMGN1-208ENST00000443046 ELMSAN1Q6PJG2 1045 aa16.14■□□□□ 0.17
HMGN1-208ENST00000443046 ZC3H14Q6PJT7 736 aaKnown RBP16.14■□□□□ 0.17
HMGN1-208ENST00000443046 SRGAP1Q7Z6B7 1085 aa16.14■□□□□ 0.17
HMGN1-208ENST00000443046 DCLK2Q8N568 766 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms