RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 ZNF862O60290 1169 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 DKC1O60832 514 aaKnown RBP eCLIP8.71□□□□□ -1.02
VPS50-204ENST00000438395 EOMESO95936 686 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 NEFLP07196 543 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 SKIP12755 728 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 TECP42680 631 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 GPC3P51654 580 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 FAM189BP81408 668 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 RNASELQ05823 741 aaKnown RBP8.71□□□□□ -1.02
VPS50-204ENST00000438395 STK3Q13188 491 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 DSC3Q14574 896 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 SMC1AQ14683 1233 aaKnown RBP8.71□□□□□ -1.02
VPS50-204ENST00000438395 NONOQ15233 471 aaKnown RBP eCLIP8.71□□□□□ -1.02
VPS50-204ENST00000438395 UGCGQ16739 394 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 DUSP6Q16828 381 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 ZNF787Q6DD87 383 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 CES5AQ6NT32 575 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 LLGL2Q6P1M3 1020 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 HFE2Q6ZVN8 426 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 RUFY3Q7L099 469 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 RETREG3Q86VR2 466 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 ECHDC2Q86YB7 292 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 BLIDQ8IZY5 108 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 FBXL16Q8N461 479 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 SLC7A3Q8WY07 619 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 CASP10Q92851 521 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 INO80BQ9C086 356 aaPredicted RBP8.71□□□□□ -1.02
VPS50-204ENST00000438395 ADAMTS10Q9H324 1103 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 CLEC1BQ9P126 229 aa8.71□□□□□ -1.02
VPS50-204ENST00000438395 DDX25Q9UHL0 483 aaKnown RBP8.71□□□□□ -1.02
VPS50-204ENST00000438395 PIN4Q9Y237 131 aaKnown RBP8.71□□□□□ -1.02
VPS50-204ENST00000438395 A0A0U1RQF3 1178 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 TMEM221A6NGB7 291 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 M0R296 226 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 ADAMTS3O15072 1205 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 ZC3H11AO75152 810 aaKnown RBP eCLIP8.7□□□□□ -1.02
VPS50-204ENST00000438395 TDP2O95551 362 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 GLP2RO95838 553 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 GCFC2P16383 781 aaKnown RBP8.7□□□□□ -1.02
VPS50-204ENST00000438395 HOXB8P17481 243 aaPredicted RBP8.7□□□□□ -1.02
VPS50-204ENST00000438395 ATF7P17544 494 aaPredicted RBP8.7□□□□□ -1.02
VPS50-204ENST00000438395 PBX3P40426 434 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 RAB27AP51159 221 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 ERVFC1P60507 584 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 PSMC5P62195 406 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 PLCB3Q01970 1234 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 CBX2Q14781 532 aaPredicted RBP8.7□□□□□ -1.02
VPS50-204ENST00000438395 NTRK3Q16288 839 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 Q4G0T1 1027 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 CATSPER4Q7RTX7 472 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 ZNF410Q86VK4 478 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 RHPN2Q8IUC4 686 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 EXOC8Q8IYI6 725 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 CYP4X1Q8N118 509 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 URGCPQ8TCY9 931 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 HELQQ8TDG4 1101 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 EDAQ92838 391 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 PBXIP1Q96AQ6 731 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 NLRP4Q96MN2 994 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 CCDC43Q96MW1 224 aaKnown RBP8.7□□□□□ -1.02
VPS50-204ENST00000438395 NAP1L4Q99733 375 aaKnown RBP8.7□□□□□ -1.02
VPS50-204ENST00000438395 AGXT2Q9BYV1 514 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 CWH43Q9H720 699 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 BRMS1Q9HCU9 246 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 CHST12Q9NRB3 414 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 PDRG1Q9NUG6 133 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 TOR4AQ9NXH8 423 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 SUCLA2Q9P2R7 463 aaPredicted RBP8.7□□□□□ -1.02
VPS50-204ENST00000438395 INPP5FQ9Y2H2 1132 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 NR2E1Q9Y466 385 aa8.7□□□□□ -1.02
VPS50-204ENST00000438395 CACNA1HO95180 2353 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.69□□□□□ -1.02
VPS50-204ENST00000438395 LOC730098B7Z3J9 87 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 FSCN2O14926 492 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 EPB41L2O43491 1005 aaKnown RBP8.69□□□□□ -1.02
VPS50-204ENST00000438395 PSMD10O75832 226 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 FGFR4P22455 802 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 POLGP54098 1239 aaPredicted RBP8.69□□□□□ -1.02
VPS50-204ENST00000438395 EVCP57679 992 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 SKOR1P84550 965 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 INF2Q27J81 1249 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 LETM2Q2VYF4 491 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 CLLU1OSQ5K130 101 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 ANKRD54Q6NXT1 300 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 MOXD1Q6UVY6 613 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 LINC01465Q8N7H1 131 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 DAGLBQ8NCG7 672 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 WASF1Q92558 559 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 GJA10Q969M2 543 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 ZNF274Q96GC6 653 aaPredicted RBP8.69□□□□□ -1.02
VPS50-204ENST00000438395 FAM20AQ96MK3 541 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 NECTIN4Q96NY8 510 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 CASD1Q96PB1 797 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 PRRX2Q99811 253 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 APOL5Q9BWW9 433 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 GBP3Q9H0R5 595 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 DZANK1Q9NVP4 752 aa8.69□□□□□ -1.02
VPS50-204ENST00000438395 CYP3A7-CYP3A51PA0A087WV96 503 aa8.68□□□□□ -1.02
VPS50-204ENST00000438395 A0A087WZ62 844 aa8.68□□□□□ -1.02
VPS50-204ENST00000438395 HIDE1A8MVS5 230 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms