RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 CNNM3Q8NE01 707 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 MAFAQ8NHW3 353 aaPredicted RBP12.65□□□□□ -0.38
COL28A1-203ENST00000435823 GDPD5Q8WTR4 605 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 RSPH1Q8WYR4 309 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 BSNDQ8WZ55 320 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 CLP1Q92989 425 aaKnown RBP12.65□□□□□ -0.38
COL28A1-203ENST00000435823 EPSTI1Q96J88 318 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 PRIMPOLQ96LW4 560 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 CLIC6Q96NY7 704 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 C17orf75Q9HAS0 396 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 DAXXQ9UER7 740 aaPredicted RBP12.65□□□□□ -0.38
COL28A1-203ENST00000435823 MRPL42Q9Y6G3 142 aaKnown RBP12.65□□□□□ -0.38
COL28A1-203ENST00000435823 NLRC5Q86WI3 1866 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 PHLPP2Q6ZVD8 1323 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 FNDC1Q4ZHG4 1894 aaPredicted RBP12.64□□□□□ -0.39
COL28A1-203ENST00000435823 CCDC169A6NNP5 214 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 ZNF623O75123 536 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 BRD1O95696 1058 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 LIG1P18858 919 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 HOXA11P31270 313 aaPredicted RBP12.64□□□□□ -0.39
COL28A1-203ENST00000435823 BMPR1AP36894 532 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 GPM6BQ13491 265 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 DHX8Q14562 1220 aaKnown RBP12.64□□□□□ -0.39
COL28A1-203ENST00000435823 RRAGBQ5VZM2 374 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 CCDC73Q6ZRK6 1079 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 GPBP1Q86WP2 473 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 LRRC43Q8N309 656 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 KCNG4Q8TDN1 519 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 LARP4BQ92615 738 aaKnown RBP12.64□□□□□ -0.39
COL28A1-203ENST00000435823 RAD54LQ92698 747 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 CPB2Q96IY4 423 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 MRPL9Q9BYD2 267 aaKnown RBP12.64□□□□□ -0.39
COL28A1-203ENST00000435823 TRIM6Q9C030 488 aaPredicted RBP12.64□□□□□ -0.39
COL28A1-203ENST00000435823 FZD8Q9H461 694 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 POLD4Q9HCU8 107 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 AAASQ9NRG9 546 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 STK17AQ9UEE5 414 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 PCDHB2Q9Y5E7 798 aa12.64□□□□□ -0.39
COL28A1-203ENST00000435823 COL4A4P53420 1690 aaPredicted RBP12.64□□□□□ -0.39
COL28A1-203ENST00000435823 CNTNAP2Q9UHC6 1331 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 C5orf67F2Z3F1 127 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 H3BNC9 293 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 K7ERI5 159 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 CUTAO60888 179 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 PRKCBP05771 671 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 KRT18P05783 430 aaKnown RBP12.63□□□□□ -0.39
COL28A1-203ENST00000435823 ATF7P17544 494 aaPredicted RBP12.63□□□□□ -0.39
COL28A1-203ENST00000435823 ARF4P18085 180 aaPredicted RBP12.63□□□□□ -0.39
COL28A1-203ENST00000435823 DDIT3P35638 169 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 SMTNP53814 917 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 PEX3P56589 373 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 RAD51AP2Q09MP3 1159 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 PRPF4BQ13523 1007 aaKnown RBP12.63□□□□□ -0.39
COL28A1-203ENST00000435823 MCM6Q14566 821 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 AMHR2Q16671 573 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 PTPROQ16827 1216 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 FAM187BQ17R55 369 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 UBXN11Q5T124 520 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 SLC27A1Q6PCB7 646 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 GLB1LQ6UWU2 654 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 USP49Q70CQ1 688 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 HACE1Q8IYU2 909 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 HELQQ8TDG4 1101 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 CASD1Q96PB1 797 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 C11orf84Q9BUA3 381 aaPredicted RBP12.63□□□□□ -0.39
COL28A1-203ENST00000435823 KIFC3Q9BVG8 833 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 PLVAPQ9BX97 442 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 UBN1Q9NPG3 1134 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 KMT5AQ9NQR1 393 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 BLOC1S4Q9NUP1 217 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 RNF19AQ9NV58 838 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 LMCD1Q9NZU5 365 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 ODF2LQ9ULJ1 636 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 RBM19Q9Y4C8 960 aaKnown RBP12.63□□□□□ -0.39
COL28A1-203ENST00000435823 ATP6V1DQ9Y5K8 247 aa12.63□□□□□ -0.39
COL28A1-203ENST00000435823 H0YCG3 227 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 ACKR2O00590 384 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 N4BP3O15049 544 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 B4GALT5O43286 388 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 LPXNO60711 386 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 TBCAO75347 108 aaKnown RBP12.62□□□□□ -0.39
COL28A1-203ENST00000435823 LINC00271P0C7V0 271 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 ITGA4P13612 1032 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 PLS3P13797 630 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 LAG3P18627 525 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 NCLP19338 710 aaKnown RBP12.62□□□□□ -0.39
COL28A1-203ENST00000435823 POU3F3P20264 500 aaPredicted RBP12.62□□□□□ -0.39
COL28A1-203ENST00000435823 STAT6P42226 847 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 NPTX2P47972 431 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 DNM1Q05193 864 aaKnown RBP12.62□□□□□ -0.39
COL28A1-203ENST00000435823 MAPK7Q13164 816 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 CSPP1Q1MSJ5 1256 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 LONRF3Q496Y0 759 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 NAALADL2Q58DX5 795 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 CLLU1OSQ5K130 101 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 MRPL10Q7Z7H8 261 aaKnown RBP12.62□□□□□ -0.39
COL28A1-203ENST00000435823 SPNS2Q8IVW8 549 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 DAW1Q8N136 415 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 MICALL1Q8N3F8 863 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 URGCPQ8TCY9 931 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms