RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 PLCB3Q01970 1234 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 SYDE2Q5VT97 1194 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 GSTA5Q7RTV2 222 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 PROM2Q8N271 834 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 SCFD2Q8WU76 684 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 PRMT6Q96LA8 375 aaPredicted RBP9.32□□□□□ -0.92
USP40-203ENST00000427112 PCDHB18PQ96TA0 734 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 LRRC27Q9C0I9 530 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 KIF9Q9HAQ2 790 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 PARVGQ9HBI0 331 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 TSKSQ9UJT2 592 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 KDM3AQ9Y4C1 1321 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 TESPA1A2RU30 521 aaPredicted RBP9.31□□□□□ -0.92
USP40-203ENST00000427112 F5H423 210 aaPredicted RBP9.31□□□□□ -0.92
USP40-203ENST00000427112 MAP3K6O95382 1288 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 BICD1Q96G01 975 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 CEP63Q96MT8 703 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 XPO6Q96QU8 1125 aaKnown RBP9.31□□□□□ -0.92
USP40-203ENST00000427112 NUP85Q9BW27 656 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 CXorf56Q9H5V9 222 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 CHST7Q9NS84 486 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 PRR12Q9ULL5 1215 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 BCORQ6W2J9 1755 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 H0YGN5 161 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 PIK3R2O00459 728 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 LCA5LO95447 670 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 ZSCAN5DPP0CG00 497 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 BMP3P12645 472 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 ETS1P14921 441 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 PRLRP16471 622 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 FNTAP49354 379 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 SKOR1P84550 965 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 SLC20A2Q08357 652 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 PPP4R3AQ6IN85 833 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 RUFY4Q6ZNE9 571 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 SIAH1Q8IUQ4 282 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 CCDC33Q8N5R6 958 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 POMGNT1Q8WZA1 660 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 TATDN2Q93075 761 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 TYW1Q9NV66 732 aaKnown RBP9.31□□□□□ -0.92
USP40-203ENST00000427112 NFS1Q9Y697 457 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 TIAM2Q8IVF5 1701 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 DOT1LQ8TEK3 1739 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 ATF7P17544 494 aaPredicted RBP9.31□□□□□ -0.92
USP40-203ENST00000427112 ORC1Q13415 861 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 NBPF20Q3BBV1 942 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 CDR2LQ86X02 465 aaPredicted RBP9.31□□□□□ -0.92
USP40-203ENST00000427112 PARP9Q8IXQ6 854 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 C4orf33Q8N1A6 199 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 SYT2Q8N9I0 419 aaPredicted RBP9.31□□□□□ -0.92
USP40-203ENST00000427112 NEK9Q8TD19 979 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 PPP1R16BQ96T49 567 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 UNC45AQ9H3U1 944 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 AGPAT3Q9NRZ7 376 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 SAE1Q9UBE0 346 aaPredicted RBP9.31□□□□□ -0.92
USP40-203ENST00000427112 INTUQ9ULD6 942 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 AGAP1Q9UPQ3 857 aa9.31□□□□□ -0.92
USP40-203ENST00000427112 UBOX5O94941 541 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 CFHP08603 1231 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 KRT10P13645 584 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 HSPA1LP34931 641 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 ADCY8P40145 1251 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 PPP1R2P41236 205 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 SNCBQ16143 134 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 GPATCH4Q5T3I0 446 aaKnown RBP9.3□□□□□ -0.92
USP40-203ENST00000427112 SLF2Q8IX21 1173 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 ETNPPLQ8TBG4 499 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 SLC5A5Q92911 643 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 LENG9Q96B70 501 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 TMEM237Q96Q45 408 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 SUGT1Q9Y2Z0 365 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 DDX60Q8IY21 1712 aaKnown RBP9.3□□□□□ -0.92
USP40-203ENST00000427112 SHANK3Q9BYB0 1731 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 RASGRF2O14827 1237 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 TRAPPC3O43617 180 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 GNA14O95837 355 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 RPA1P27694 616 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 NRLP54845 237 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 SPIRE1Q08AE8 756 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 TMED2Q15363 201 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 IFI16Q16666 785 aaKnown RBP9.3□□□□□ -0.92
USP40-203ENST00000427112 ANKRD20A8PQ5CZ79 823 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 ARFGAP2Q8N6H7 521 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 PRELID2Q8N945 189 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 ATP8B4Q8TF62 1192 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 LMBR1Q8WVP7 490 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 PBKQ96KB5 322 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 ERP44Q9BS26 406 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.3□□□□□ -0.92
USP40-203ENST00000427112 KCNMB3Q9NPA1 279 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 SAMD15Q9P1V8 674 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 FAM198AQ9UFP1 575 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 RARAP10276 462 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 PAX7P23759 505 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 BIRC3Q13489 604 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 BYSLQ13895 437 aaKnown RBP9.3□□□□□ -0.92
USP40-203ENST00000427112 GLE1Q53GS7 698 aaKnown RBP9.3□□□□□ -0.92
USP40-203ENST00000427112 SEL1L2Q5TEA6 688 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 PADI6Q6TGC4 694 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 NOP9Q86U38 636 aaKnown RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms