RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 IQCB1Q15051 598 aa15.59■□□□□ 0.09
SKA1-202ENST00000398452 MAPK6Q16659 721 aa15.59■□□□□ 0.09
SKA1-202ENST00000398452 CENPPQ6IPU0 288 aa15.59■□□□□ 0.09
SKA1-202ENST00000398452 EPM2AIP1Q7L775 607 aaPredicted RBP15.59■□□□□ 0.09
SKA1-202ENST00000398452 SESTD1Q86VW0 696 aa15.59■□□□□ 0.09
SKA1-202ENST00000398452 TMEM161BQ8NDZ6 487 aa15.59■□□□□ 0.09
SKA1-202ENST00000398452 BSNDQ8WZ55 320 aa15.59■□□□□ 0.09
SKA1-202ENST00000398452 KIFC3Q9BVG8 833 aa15.59■□□□□ 0.09
SKA1-202ENST00000398452 INO80BQ9C086 356 aaPredicted RBP15.59■□□□□ 0.09
SKA1-202ENST00000398452 TMEM134Q9H6X4 195 aa15.59■□□□□ 0.09
SKA1-202ENST00000398452 OGDHLQ9ULD0 1010 aa15.59■□□□□ 0.09
SKA1-202ENST00000398452 TBX20Q9UMR3 447 aa15.59■□□□□ 0.09
SKA1-202ENST00000398452 PHF24Q9UPV7 400 aa15.59■□□□□ 0.09
SKA1-202ENST00000398452 KAT6AQ92794 2004 aa15.59■□□□□ 0.09
SKA1-202ENST00000398452 A0A1W2PQ45 241 aaPredicted RBP15.58■□□□□ 0.08
SKA1-202ENST00000398452 A0A1W2PQY0 241 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 HNRNPDLO14979 420 aaKnown RBP15.58■□□□□ 0.08
SKA1-202ENST00000398452 CETN3O15182 167 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 TREHO43280 583 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 VTNP04004 478 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 TPM3P06753 285 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 MATR3P43243 847 aaKnown RBP eCLIP15.58■□□□□ 0.085e-6■■□□□ 12.5
SKA1-202ENST00000398452 LIG4P49917 911 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 DRP2Q13474 957 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 PTGISQ16647 500 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 EDRF1Q3B7T1 1238 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 MARCH8Q5T0T0 291 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 FOXR2Q6PJQ5 311 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 DHX40Q8IX18 779 aaKnown RBP15.58■□□□□ 0.08
SKA1-202ENST00000398452 C7orf61Q8IZ16 206 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 GLIS3Q8NEA6 775 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 FIZ1Q96SL8 496 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 GCOM2Q9BZD3 368 aaPredicted RBP15.58■□□□□ 0.08
SKA1-202ENST00000398452 ARHGAP28Q9P2N2 729 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 GINS2Q9Y248 185 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 MYH11P35749 1972 aa15.58■□□□□ 0.08
SKA1-202ENST00000398452 FSD2A1L4K1 749 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 TRIM49BA6NDI0 452 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 TLR3O15455 904 aaKnown RBP15.57■□□□□ 0.08
SKA1-202ENST00000398452 ERLIN2O94905 339 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 GNA14O95837 355 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 NLRP11P59045 1033 aaKnown RBP15.57■□□□□ 0.08
SKA1-202ENST00000398452 ANKRD40Q6AI12 368 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 ARMCX5Q6P1M9 558 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 SRGAP1Q7Z6B7 1085 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 MAP4K3Q8IVH8 894 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 KSR1Q8IVT5 923 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 KIAA0319LQ8IZA0 1049 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 LINC01465Q8N7H1 131 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 PPP1R13LQ8WUF5 828 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 DNAJB3Q8WWF6 145 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 ZBTB10Q96DT7 871 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 SRRTQ9BXP5 876 aaKnown RBP15.57■□□□□ 0.08
SKA1-202ENST00000398452 MRPL4Q9BYD3 311 aaKnown RBP15.57■□□□□ 0.08
SKA1-202ENST00000398452 FGFBP2Q9BYJ0 223 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 SEMA6BQ9H3T3 888 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 THAP9Q9H5L6 903 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 PRMT7Q9NVM4 692 aaPredicted RBP15.57■□□□□ 0.08
SKA1-202ENST00000398452 FANCLQ9NW38 375 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 ZMYND8Q9ULU4 1186 aaPredicted RBP15.57■□□□□ 0.08
SKA1-202ENST00000398452 TRAF3IP3Q9Y228 551 aa15.57■□□□□ 0.08
SKA1-202ENST00000398452 A0A087WZ62 844 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 PPP1R37O75864 691 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 SERPINC1P01008 464 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 PRKCBP05771 671 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 NR2F2P24468 414 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 GPC3P51654 580 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 PTENP60484 403 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 ADAM9Q13443 819 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 CCDC40Q4G0X9 1142 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 FILIP1LQ4L180 1135 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 SLFN12LQ6IEE8 588 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 GDF6Q6KF10 455 aaPredicted RBP15.56■□□□□ 0.08
SKA1-202ENST00000398452 TTI2Q6NXR4 508 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 APBB1IPQ7Z5R6 666 aaPredicted RBP15.56■□□□□ 0.08
SKA1-202ENST00000398452 CCDC155Q8N6L0 562 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 ANKLE1Q8NAG6 615 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 CEP63Q96MT8 703 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 CTAGE1Q96RT6 745 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 PPP1R16BQ96T49 567 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 FDXACB1Q9BRP7 624 aaPredicted RBP15.56■□□□□ 0.08
SKA1-202ENST00000398452 TCHPQ9BT92 498 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 NFKBIZQ9BYH8 718 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 FRMD4BQ9Y2L6 1034 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 MROH7Q68CQ1 1323 aa15.56■□□□□ 0.08
SKA1-202ENST00000398452 ARVCFO00192 962 aa15.55■□□□□ 0.08
SKA1-202ENST00000398452 CBFA2T2O43439 604 aa15.55■□□□□ 0.08
SKA1-202ENST00000398452 NR3C1P04150 777 aa15.55■□□□□ 0.08
SKA1-202ENST00000398452 EPB41P11171 864 aaKnown RBP15.55■□□□□ 0.08
SKA1-202ENST00000398452 SYN1P17600 705 aa15.55■□□□□ 0.08
SKA1-202ENST00000398452 SFPQP23246 707 aaKnown RBP eCLIP15.55■□□□□ 0.08
SKA1-202ENST00000398452 HOXC8P31273 242 aa15.55■□□□□ 0.08
SKA1-202ENST00000398452 ADAM17P78536 824 aa15.55■□□□□ 0.08
SKA1-202ENST00000398452 ZNF200P98182 395 aaPredicted RBP15.55■□□□□ 0.08
SKA1-202ENST00000398452 TMEM62Q0P6H9 643 aa15.55■□□□□ 0.08
SKA1-202ENST00000398452 PTK7Q13308 1070 aa15.55■□□□□ 0.08
SKA1-202ENST00000398452 PRPF4BQ13523 1007 aaKnown RBP15.55■□□□□ 0.08
SKA1-202ENST00000398452 PCBP1Q15365 356 aaKnown RBP eCLIP15.55■□□□□ 0.08
SKA1-202ENST00000398452 CDCA2Q69YH5 1023 aaPredicted RBP15.55■□□□□ 0.08
SKA1-202ENST00000398452 POMGNT1Q8WZA1 660 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms