RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 PCNTO95613 3336 aa10.41□□□□□ -0.74
TRIM39-202ENST00000376659 PGRMC1O00264 195 aaKnown RBP10.41□□□□□ -0.74
TRIM39-202ENST00000376659 EIF3HO15372 352 aaKnown RBP eCLIP10.41□□□□□ -0.74
TRIM39-202ENST00000376659 KRT14P02533 472 aa10.41□□□□□ -0.74
TRIM39-202ENST00000376659 ASNSP08243 561 aa10.41□□□□□ -0.74
TRIM39-202ENST00000376659 LMNB1P20700 586 aa10.41□□□□□ -0.74
TRIM39-202ENST00000376659 FMO1Q01740 532 aa10.41□□□□□ -0.74
TRIM39-202ENST00000376659 DUPD1Q68J44 220 aa10.41□□□□□ -0.74
TRIM39-202ENST00000376659 TMC3Q7Z5M5 1100 aa10.41□□□□□ -0.74
TRIM39-202ENST00000376659 CPNE8Q86YQ8 564 aa10.41□□□□□ -0.74
TRIM39-202ENST00000376659 C12orf42Q96LP6 360 aa10.41□□□□□ -0.74
TRIM39-202ENST00000376659 HAPLN2Q9GZV7 340 aa10.41□□□□□ -0.74
TRIM39-202ENST00000376659 SLITRK6Q9H5Y7 841 aa10.41□□□□□ -0.74
TRIM39-202ENST00000376659 TMBIM4Q9HC24 238 aa10.41□□□□□ -0.74
TRIM39-202ENST00000376659 GRHL1Q9NZI5 618 aa10.41□□□□□ -0.74
TRIM39-202ENST00000376659 KCNK3O14649 394 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 CYP1A2P05177 515 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 YWHABP31946 246 aaKnown RBP10.4□□□□□ -0.74
TRIM39-202ENST00000376659 HSD17B3P37058 310 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 CYP2J2P51589 502 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 RPS6KA1Q15418 735 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 SPDYCQ5MJ68 293 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 PRPF38AQ8NAV1 312 aaKnown RBP10.4□□□□□ -0.74
TRIM39-202ENST00000376659 TRERF1Q96PN7 1200 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 AGPAT1Q99943 283 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 PDCD2LQ9BRP1 358 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 ZHX3Q9H4I2 956 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 FEZ2Q9UHY8 353 aaPredicted RBP10.4□□□□□ -0.74
TRIM39-202ENST00000376659 CCPG1Q9ULG6 757 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 ATP2A1O14983 1001 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 PPFIA2O75334 1257 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 H2AFZP0C0S5 128 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 MARCKSL1P49006 195 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 GPC3P51654 580 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 ZNF844Q08AG5 666 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 GPS2Q13227 327 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 CUL1Q13616 776 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 H2AFVQ71UI9 128 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 PSPC1Q8WXF1 523 aaKnown RBP10.4□□□□□ -0.74
TRIM39-202ENST00000376659 CARD9Q9H257 536 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 GPRC5CQ9NQ84 441 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 ZNF214Q9UL59 606 aaPredicted RBP10.4□□□□□ -0.74
TRIM39-202ENST00000376659 STYXL1Q9Y6J8 313 aa10.4□□□□□ -0.74
TRIM39-202ENST00000376659 LOC102724159A0A0B4J2E5 919 aa10.4□□□□□ -0.75
TRIM39-202ENST00000376659 ANKRD62A6NC57 917 aa10.4□□□□□ -0.75
TRIM39-202ENST00000376659 MYO1FO00160 1098 aa10.4□□□□□ -0.75
TRIM39-202ENST00000376659 VWA5AO00534 786 aa10.4□□□□□ -0.75
TRIM39-202ENST00000376659 SART1O43290 800 aaKnown RBP10.4□□□□□ -0.75
TRIM39-202ENST00000376659 EDN1P05305 212 aa10.4□□□□□ -0.75
TRIM39-202ENST00000376659 MATR3P43243 847 aaKnown RBP eCLIP10.4□□□□□ -0.75
TRIM39-202ENST00000376659 VAMP7P51809 220 aa10.4□□□□□ -0.75
TRIM39-202ENST00000376659 RPS6P62753 249 aaKnown RBP10.4□□□□□ -0.75
TRIM39-202ENST00000376659 EN1Q05925 392 aaPredicted RBP10.4□□□□□ -0.75
TRIM39-202ENST00000376659 IKQ13123 557 aaPredicted RBP10.4□□□□□ -0.75
TRIM39-202ENST00000376659 PPFIA1Q13136 1202 aa10.4□□□□□ -0.75
TRIM39-202ENST00000376659 PAK2Q13177 524 aa10.4□□□□□ -0.75
TRIM39-202ENST00000376659 PWP2Q15269 919 aaKnown RBP10.4□□□□□ -0.75
TRIM39-202ENST00000376659 ZYXQ15942 572 aaKnown RBP10.4□□□□□ -0.75
TRIM39-202ENST00000376659 TTC27Q6P3X3 843 aa10.4□□□□□ -0.75
TRIM39-202ENST00000376659 INTS8Q75QN2 995 aaKnown RBP10.4□□□□□ -0.75
TRIM39-202ENST00000376659 ACBD3Q9H3P7 528 aa10.4□□□□□ -0.75
TRIM39-202ENST00000376659 EHMT1Q9H9B1 1298 aa10.4□□□□□ -0.75
TRIM39-202ENST00000376659 XPNPEP1Q9NQW7 623 aa10.4□□□□□ -0.75
TRIM39-202ENST00000376659 LTBP3Q9NS15 1303 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 CCDC188H7C350 402 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 FAM189A1O60320 539 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 PPFIA4O75335 1185 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 ZNF76P36508 570 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 PAFAH1B1P43034 410 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 QARSP47897 775 aaKnown RBP10.39□□□□□ -0.75
TRIM39-202ENST00000376659 EP400NLQ6ZTU2 488 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 C12orf50Q8NA57 414 aaPredicted RBP10.39□□□□□ -0.75
TRIM39-202ENST00000376659 U2AF1L4Q8WU68 220 aaKnown RBP10.39□□□□□ -0.75
TRIM39-202ENST00000376659 HVCN1Q96D96 273 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 CCDC43Q96MW1 224 aaKnown RBP10.39□□□□□ -0.75
TRIM39-202ENST00000376659 SPAG5Q96R06 1193 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 TMX4Q9H1E5 349 aaPredicted RBP10.39□□□□□ -0.75
TRIM39-202ENST00000376659 LUC7LQ9NQ29 371 aaKnown RBP10.39□□□□□ -0.75
TRIM39-202ENST00000376659 NFASCO94856 1347 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 SRRM3A6NNA2 597 aaPredicted RBP10.39□□□□□ -0.75
TRIM39-202ENST00000376659 K7ENM7 598 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 MTMR1Q13613 665 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 AADACL2Q6P093 401 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 DDX42Q86XP3 938 aaKnown RBP eCLIP10.39□□□□□ -0.75
TRIM39-202ENST00000376659 SH2D3CQ8N5H7 860 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 UBR7Q8N806 425 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 AP1M1Q9BXS5 423 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 TMEM206Q9H813 350 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 ANKEF1Q9NU02 776 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 SCAF8Q9UPN6 1271 aaKnown RBP10.39□□□□□ -0.75
TRIM39-202ENST00000376659 DIS3Q9Y2L1 958 aaKnown RBP10.39□□□□□ -0.75
TRIM39-202ENST00000376659 PTPRJQ12913 1337 aa10.39□□□□□ -0.75
TRIM39-202ENST00000376659 GOLGA6CA6NDK9 693 aa10.38□□□□□ -0.75
TRIM39-202ENST00000376659 CTNND1O60716 968 aaKnown RBP10.38□□□□□ -0.75
TRIM39-202ENST00000376659 SGPL1O95470 568 aa10.38□□□□□ -0.75
TRIM39-202ENST00000376659 CPP00450 1065 aa10.38□□□□□ -0.75
TRIM39-202ENST00000376659 PAEPP09466 180 aa10.38□□□□□ -0.75
TRIM39-202ENST00000376659 GOLGA6DP0CG33 693 aa10.38□□□□□ -0.75
TRIM39-202ENST00000376659 ATP4AP20648 1035 aa10.38□□□□□ -0.75
TRIM39-202ENST00000376659 CTNNA1P35221 906 aaKnown RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms